# HG changeset patch
# User iuc
# Date 1673537589 0
# Node ID a2f8dc22d7c0f4b1abbe4f41465192118e58187d
# Parent  388983871932fa590bf78d857daa54039171e150
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 96c0663be587b73bdf09ddf060cb559f28f9eba7

diff -r 388983871932 -r a2f8dc22d7c0 bcftools_stats.xml
--- a/bcftools_stats.xml	Thu Sep 29 09:04:17 2022 +0000
+++ b/bcftools_stats.xml	Thu Jan 12 15:33:09 2023 +0000
@@ -9,7 +9,7 @@
     <expand macro="requirements">
         <expand macro="samtools_requirement"/>
         <expand macro="matplotlib_requirement" />
-        <requirement type="package" version="0.8.0">tectonic</requirement>
+        <requirement type="package" version="0.12.0">tectonic</requirement>
     </expand>
     <expand macro="version_command" />
     <command detect_errors="aggressive"><![CDATA[
@@ -89,13 +89,13 @@
             <expand macro="macro_include" />
             <expand macro="macro_exclude" />
         </section>
-        <section name="sec_default" expanded="true" title="Stats Options">
-            <param name="first_allele_only" type="boolean" truevalue="--1st-allele-only" falsevalue="" label="1St Allele Only" 
-                   help="Include only 1st allele at multiallelic sites" />
+        <section name="sec_default" expanded="true" title="Stats options">
+            <param name="first_allele_only" type="boolean" truevalue="--1st-allele-only" falsevalue="" label="First allele only" 
+                   help="Include only first allele at multiallelic sites" />
             <conditional name="depth">
-                <param name="set_depth" type="select" label="depth distribution: min,max,bin_size [0,500,1]">
-                    <option value="no">use depth defaults</option>
-                    <option value="yes">set depth</option>
+                <param name="set_depth" type="select" label="Depth distribution">
+                    <option value="no">Use depth defaults</option>
+                    <option value="yes">Set depth values</option>
                 </param>
                 <when value="no"/>
                 <when value="yes">
@@ -124,7 +124,7 @@
                 </when>
             </conditional>
             <expand macro="macro_exons_file" />
-            <param name="split_by_ID" type="boolean" truevalue="--split-by-ID" falsevalue="" label="Split By Id (Ignored on multiple inputs)" 
+            <param name="split_by_ID" type="boolean" truevalue="--split-by-ID" falsevalue="" label="Split by ID (ignored on multiple inputs)" 
                    help="Collect stats for sites with ID separately (known vs novel)" />
             <param name="user_tstv" type="text" value="" optional="true" label="User Tstv" 
                    help="Collect Ts/Tv stats for any tag using the given binning: TAG[:min:max:binsize]" >
@@ -132,21 +132,21 @@
             </param>
             <conditional name="afbins">
                 <param name="afbins_select" type="select" label="Set af-bins">
-                    <option value="default">use default</option>
-                    <option value="af_bins_list">enter bins</option>
-                    <option value="af_bins_file">read bins from file</option>
+                    <option value="default">Use default</option>
+                    <option value="af_bins_list">Enter bins</option>
+                    <option value="af_bins_file">Read bins from file</option>
                 </param>
                 <when value="default"/>
                 <when value="af_bins_list">
-                    <param name="af_bins_list" type="text" value="0.1,0.5,1" label="list of allele frequency bins (e.g. 0.1,0.5,1)"> 
-                        <validator type="regex" message="comma-separated list of floats of increasing value">^[-+]?(\d+(\.\d*)?|\.\d+)([eE][-+]?\d+)?(,[-+]?(\d+(\.\d*)?|\.\d+)([eE][-+]?\d+)?)*$</validator>
+                    <param name="af_bins_list" type="text" value="0.1,0.5,1" label="List of allele frequency bins" help="e.g. 0.1,0.5,1"> 
+                        <validator type="regex" message="Comma-separated list of floats of increasing value">^[-+]?(\d+(\.\d*)?|\.\d+)([eE][-+]?\d+)?(,[-+]?(\d+(\.\d*)?|\.\d+)([eE][-+]?\d+)?)*$</validator>
                     </param>
                 </when>
                 <when value="af_bins_file">
-                    <param name="af_bins_file" type="data" format="tabular" label="file listing the allele frequency bins one per line"/> 
+                    <param name="af_bins_file" type="data" format="tabular" label="File listing the allele frequency bins one per line"/> 
                 </when>
             </conditional>
-            <param name="af_tag" type="text" value="" optional="true" label="allele frequency tag to use, by default estimated from AN,AC or GT">
+            <param name="af_tag" type="text" value="" optional="true" label="Allele frequency tag to use, by default estimated from AN,AC or GT">
                   <validator type="regex" message="TAG">^\w*$</validator>
             </param>
             <param name="verbose" type="boolean" truevalue="--verbose" falsevalue="" label="Verbose" 
diff -r 388983871932 -r a2f8dc22d7c0 macros.xml
--- a/macros.xml	Thu Sep 29 09:04:17 2022 +0000
+++ b/macros.xml	Thu Jan 12 15:33:09 2023 +0000
@@ -1,6 +1,6 @@
 <macros>
   <token name="@TOOL_VERSION@">1.15.1</token>
-  <token name="@VERSION_SUFFIX@">2</token>
+  <token name="@VERSION_SUFFIX@">3</token>
   <token name="@PROFILE@">20.01</token>
   <xml name="bio_tools">
       <xrefs>