comparison bcftools_view.xml @ 7:d1f8f55f564d draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools commit 2684e1443f03bfe2ae20c31d23817415ec8f7e69

6:3a233c8eb814

<?xml version='1.0' encoding='utf-8'?>
<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@VERSION@">
    <description>VCF/BCF conversion, view, subset and filter VCF/BCF files</description>
    <macros>
        <token name="@EXECUTABLE@">view</token>
        <import>macros.xml</import>
        <xml name="macro_types_options">

                    <not_has_text text="rs6111385" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="input_file" ftype="vcf" value="view.vcf" />
            <param name="known_or_novel" value="--novel" />
            <param name="private" value="--exclude-private" />
            <param name="samples" value="NA00003" />
            <param name="regions" value="20,Y" />

7:d1f8f55f564d

<?xml version='1.0' encoding='utf-8'?>
<tool name="bcftools @EXECUTABLE@" id="bcftools_@EXECUTABLE@" version="@TOOL_VERSION@">
    <description>VCF/BCF conversion, view, subset and filter VCF/BCF files</description>
    <macros>
        <token name="@EXECUTABLE@">view</token>
        <import>macros.xml</import>
        <xml name="macro_types_options">

                    <not_has_text text="rs6111385" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="input_file" ftype="bcf" value="view.bcf" />
            <param name="min_ac" value="1" />
            <param name="max_ac" value="1" />
            <param name="samples" value="NA00002" />
            <param name="types" value="snps" />
            <param name="output_type" value="v" />
            <output name="output_file">
                <assert_contents>
                    <has_text text="rs2298108" />
                    <not_has_text text="rs6111385" />
                </assert_contents>
            </output>
        </test>
        <test>
            <param name="input_file" ftype="vcf" value="view.vcf" />
            <param name="known_or_novel" value="--novel" />
            <param name="private" value="--exclude-private" />
            <param name="samples" value="NA00003" />
            <param name="regions" value="20,Y" />