diff remove_tail.xml @ 0:c713b677ff44 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ae3b9baaf7040ed8b165d17466b8b2fe016d3d48

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/remove_tail.xml	Tue Nov 14 05:52:08 2017 -0500
@@ -0,0 +1,36 @@
+<tool id="bctools_remove_tail" name="Remove 3'-end nts" version="@VERSION@">
+    <description>from FASTQ</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <command detect_errors="exit_code"><![CDATA[
+        remove_tail.py
+        '$reads_fastq'
+        '$length'
+        > '$default'
+    ]]></command>
+    <inputs>
+        <param name="reads_fastq" type="data" format="fastq" label="FASTQ file"/>
+        <param name="length" type="integer" value="0" label="Remove this many nucleotides"/>
+    </inputs>
+    <outputs>
+        <data name="default" format="fastq"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="reads_fastq" value="readswithtail.fastq"/>
+            <param name="length" value="7"/>
+            <output name="default" file="readswithtailremoved.fastq"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+
+bctools - Remove 3'-end nts from FASTQ
+======================================
+
+Remove a certain number of nucleotides from the 3'-tails of sequences in FASTQ format.
+
+    ]]></help>
+    <expand macro="citations"/>
+</tool>