Mercurial > repos > iuc > beacon2_datasets
comparison test-data/biosamples_query_findings.json @ 0:a38d4a52dbff draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit f4151aa2d760f931f819f954f465ef66055bf258
author | iuc |
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date | Mon, 22 Jul 2024 12:36:52 +0000 |
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1 {'_id': ObjectId('668fb4eb8ed056280039f1bd'), | |
2 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
3 'collectionDate': '2021-04-23', | |
4 'collectionMoment': 'P32Y6M1D', | |
5 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
6 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
7 'label': 'Infiltrating Urothelial Carcinoma'}, | |
8 'id': 'refvar-668fb4eb8ed056280039f1bd', | |
9 'individualId': 'NA24631', | |
10 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
11 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
12 'label': 'T2b Stage Finding'}], | |
13 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
14 'label': 'wall of urinary bladde'}, | |
15 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
16 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
17 'tumorProgression': {'id': 'NCIT:C84509', | |
18 'label': 'Primary Malignant Neoplasm'}} | |
19 {'_id': ObjectId('668fb4eb8ed056280039f1be'), | |
20 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
21 'collectionDate': '2021-04-23', | |
22 'collectionMoment': 'P32Y6M1D', | |
23 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
24 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
25 'label': 'Infiltrating Urothelial Carcinoma'}, | |
26 'id': 'refvar-668fb4eb8ed056280039f1be', | |
27 'individualId': 'NA24694', | |
28 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
29 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
30 'label': 'T2b Stage Finding'}], | |
31 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
32 'label': 'wall of urinary bladde'}, | |
33 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
34 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
35 'tumorProgression': {'id': 'NCIT:C84509', | |
36 'label': 'Primary Malignant Neoplasm'}} | |
37 {'_id': ObjectId('668fb4eb8ed056280039f1bf'), | |
38 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
39 'collectionDate': '2021-04-23', | |
40 'collectionMoment': 'P32Y6M1D', | |
41 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
42 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
43 'label': 'Infiltrating Urothelial Carcinoma'}, | |
44 'id': 'refvar-668fb4eb8ed056280039f1bf', | |
45 'individualId': 'NA24695', | |
46 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
47 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
48 'label': 'T2b Stage Finding'}], | |
49 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
50 'label': 'wall of urinary bladde'}, | |
51 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
52 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
53 'tumorProgression': {'id': 'NCIT:C84509', | |
54 'label': 'Primary Malignant Neoplasm'}} | |
55 {'_id': ObjectId('668fb7125d00a890d911aa69'), | |
56 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
57 'collectionDate': '2021-04-23', | |
58 'collectionMoment': 'P32Y6M1D', | |
59 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
60 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
61 'label': 'Infiltrating Urothelial Carcinoma'}, | |
62 'id': 'refvar-668fb7125d00a890d911aa69', | |
63 'individualId': 'NA24631', | |
64 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
65 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
66 'label': 'T2b Stage Finding'}], | |
67 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
68 'label': 'wall of urinary bladde'}, | |
69 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
70 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
71 'tumorProgression': {'id': 'NCIT:C84509', | |
72 'label': 'Primary Malignant Neoplasm'}} | |
73 {'_id': ObjectId('668fb7125d00a890d911aa6a'), | |
74 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
75 'collectionDate': '2021-04-23', | |
76 'collectionMoment': 'P32Y6M1D', | |
77 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
78 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
79 'label': 'Infiltrating Urothelial Carcinoma'}, | |
80 'id': 'refvar-668fb7125d00a890d911aa6a', | |
81 'individualId': 'NA24694', | |
82 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
83 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
84 'label': 'T2b Stage Finding'}], | |
85 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
86 'label': 'wall of urinary bladde'}, | |
87 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
88 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
89 'tumorProgression': {'id': 'NCIT:C84509', | |
90 'label': 'Primary Malignant Neoplasm'}} | |
91 {'_id': ObjectId('668fb7125d00a890d911aa6b'), | |
92 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
93 'collectionDate': '2021-04-23', | |
94 'collectionMoment': 'P32Y6M1D', | |
95 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
96 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
97 'label': 'Infiltrating Urothelial Carcinoma'}, | |
98 'id': 'refvar-668fb7125d00a890d911aa6b', | |
99 'individualId': 'NA24695', | |
100 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
101 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
102 'label': 'T2b Stage Finding'}], | |
103 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
104 'label': 'wall of urinary bladde'}, | |
105 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
106 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
107 'tumorProgression': {'id': 'NCIT:C84509', | |
108 'label': 'Primary Malignant Neoplasm'}} | |
109 {'_id': ObjectId('668fb721ae6c452887afb69d'), | |
110 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
111 'collectionDate': '2021-04-23', | |
112 'collectionMoment': 'P32Y6M1D', | |
113 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
114 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
115 'label': 'Infiltrating Urothelial Carcinoma'}, | |
116 'id': 'refvar-668fb721ae6c452887afb69d', | |
117 'individualId': 'NA24631', | |
118 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
119 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
120 'label': 'T2b Stage Finding'}], | |
121 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
122 'label': 'wall of urinary bladde'}, | |
123 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
124 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
125 'tumorProgression': {'id': 'NCIT:C84509', | |
126 'label': 'Primary Malignant Neoplasm'}} | |
127 {'_id': ObjectId('668fb721ae6c452887afb69e'), | |
128 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
129 'collectionDate': '2021-04-23', | |
130 'collectionMoment': 'P32Y6M1D', | |
131 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
132 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
133 'label': 'Infiltrating Urothelial Carcinoma'}, | |
134 'id': 'refvar-668fb721ae6c452887afb69e', | |
135 'individualId': 'NA24694', | |
136 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
137 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
138 'label': 'T2b Stage Finding'}], | |
139 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
140 'label': 'wall of urinary bladde'}, | |
141 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
142 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
143 'tumorProgression': {'id': 'NCIT:C84509', | |
144 'label': 'Primary Malignant Neoplasm'}} | |
145 {'_id': ObjectId('668fb721ae6c452887afb69f'), | |
146 'biosampleStatus': {'id': 'EFO:0009655', 'label': 'abnormal sample'}, | |
147 'collectionDate': '2021-04-23', | |
148 'collectionMoment': 'P32Y6M1D', | |
149 'diagnosticMarkers': [{'id': 'NCIT:C48726', 'label': 'T2b Stage Finding'}], | |
150 'histologicalDiagnosis': {'id': 'NCIT:C39853', | |
151 'label': 'Infiltrating Urothelial Carcinoma'}, | |
152 'id': 'refvar-668fb721ae6c452887afb69f', | |
153 'individualId': 'NA24695', | |
154 'pathologicalStage': {'id': 'NCIT:C28054', 'label': 'Stage II'}, | |
155 'pathologicalTnmFinding': [{'id': 'NCIT:C48726', | |
156 'label': 'T2b Stage Finding'}], | |
157 'sampleOriginDetail': {'id': 'UBERON:0001256', | |
158 'label': 'wall of urinary bladde'}, | |
159 'sampleOriginType': {'id': 'EFO:000965', 'label': 'abnormal sample'}, | |
160 'tumorGrade': {'id': 'NCIT:C36136', 'label': 'Grade 2 Lesion'}, | |
161 'tumorProgression': {'id': 'NCIT:C84509', | |
162 'label': 'Primary Malignant Neoplasm'}} |