Mercurial > repos > iuc > beacon2_import
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/beacon2-import commit 23f6d9e5e91c43d5ab68e604205e06785635f42f
author | iuc |
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date | Mon, 19 Aug 2024 10:50:22 +0000 |
parents | 0f85ad162439 |
children |
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<macros> <token name="@VERSION_SUFFIX@">0</token> <token name="@TOOL_VERSION@">2.2.3</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">beacon2-import</requirement> </requirements> </xml> <xml name="xrefs"> <xrefs> <xref type="bio.tools">ga4gh_beacon</xref> </xrefs> </xml> <xml name="creators"> <creator> <person givenName="Khaled" familyName="Jum'ah" url="https://github.com/khaled196" /> <person givenName="Björn" familyName="Grüning" url="https://github.com/bgruening" /> <person givenName="Katarzyna" familyName="Kamieniecka" url="https://github.com/kkamieniecka" /> <person givenName="Krzysztof" familyName="Poterlowicz" url="https://github.com/poterlowicz-lab" /> <organization name="poterlowicz-lab" url="https://github.com/poterlowicz-lab" /> </creator> </xml> <xml name="Connection_to_MongoDB"> <param argument="--db-host" type="text" label="DATABASE HOST" value="127.0.0.1" help="Hostname/IP of the beacon database" /> <param argument="--db-port" type="integer" label="DATABASE PORT" value="27017" help="Port of the beacon database" /> </xml> <xml name="Database_Configuration"> <param argument="--database" type="text" label="DATABASE" value="" help="The targeted beacon database" /> <param argument="--collection" type="text" label="COLLECTION" value="" help="The targeted beacon collection from the desired database" /> </xml> <xml name="citations"> <citations> <citation type="doi">10.1002/humu.24369</citation> </citations> </xml> <xml name="configfile"> <configfiles> <configfile name="credentials"><![CDATA[ #set $db_auth_source = $__user__.extra_preferences.get('beacon2_account|db_auth_source', "") #set $db_user = $__user__.extra_preferences.get('beacon2_account|db_user', "") #set $db_password = $__user__.extra_preferences.get('beacon2_account|db_password', "") #if $db_user == "" or $db_password == "" or $db_auth_source == "": #set $db_auth_source = "admin" #set $db_user = "root" #set $db_password = "example" #end if { "db_auth_source": "$db_auth_source", "db_user": "$db_user", "db_password": "$db_password" } ]]></configfile> </configfiles> </xml> </macros>