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comparison closestBed.xml @ 43:07e8b80f278c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit db0b91a784ca0c216345bc488d7d488babf1b53f"
author iuc
date Fri, 01 Apr 2022 19:02:51 +0000
parents 7ab85ac5f64b
children
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42:841fb4dc3ab3 43:07e8b80f278c
147 <param name="source" value="history" /> 147 <param name="source" value="history" />
148 <param name="inputB" value="a.bed" ftype="bed" /> 148 <param name="inputB" value="a.bed" ftype="bed" />
149 <param name="k" value="3" /> 149 <param name="k" value="3" />
150 <output name="output" file="closestBed_result6.bed" ftype="bed" /> 150 <output name="output" file="closestBed_result6.bed" ftype="bed" />
151 </test> 151 </test>
152 <test>
153 <param name="inputA" value="closestBedA.bed" ftype="bed" />
154 <param name="source" value="data_table" />
155 <param name="inputB" value="testid" />
156 <param name="k" value="3" />
157 <output name="output" file="closestBed_result6.bed" ftype="bed" />
158 </test>
152 </tests> 159 </tests>
153 <help><![CDATA[ 160 <help><![CDATA[
154 **What it does** 161 **What it does**
155 162
156 Similar to intersectBed, closestBed searches for overlapping features in A and B. In the event that no feature in B overlaps the current feature in A, closestBed will report the closest (that is, least genomic distance from the start or end of A) feature in B. For example, one might want to find which is the closest gene to a significant GWAS polymorphism. Note that closestBed will report an overlapping feature as the closest—that is, it does not restrict to closest non-overlapping feature. 163 Similar to intersectBed, closestBed searches for overlapping features in A and B. In the event that no feature in B overlaps the current feature in A, closestBed will report the closest (that is, least genomic distance from the start or end of A) feature in B. For example, one might want to find which is the closest gene to a significant GWAS polymorphism. Note that closestBed will report an overlapping feature as the closest—that is, it does not restrict to closest non-overlapping feature.