comparison shuffleBed.xml @ 43:07e8b80f278c draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit db0b91a784ca0c216345bc488d7d488babf1b53f"
author iuc
date Fri, 01 Apr 2022 19:02:51 +0000
parents 7ab85ac5f64b
children 64e2edfe7a2c
comparison
equal deleted inserted replaced
42:841fb4dc3ab3 43:07e8b80f278c
1 <tool id="bedtools_shufflebed" name="bedtools ShuffleBed" version="@TOOL_VERSION@" profile="@PROFILE@"> 1 <tool id="bedtools_shufflebed" name="bedtools ShuffleBed" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
2 <description>randomly redistrubute intervals in a genome</description> 2 <description>randomly redistrubute intervals in a genome</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools" /> 6 <expand macro="bio_tools" />
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <expand macro="stdio" /> 8 <expand macro="stdio" />
9 <command><![CDATA[ 9 <command><![CDATA[
10 bedtools shuffle 10 bedtools shuffle
11 -g @GENOME_FILE@ 11 @GENOME_FILE@
12 -i '$inputA' 12 -i '$inputA'
13 $bedpe 13 $bedpe
14 #if str($seed.seed_choose) == "True": 14 #if str($seed.seed_choose) == "True":
15 -seed $seed.seed 15 -seed $seed.seed
16 #end if 16 #end if