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comparison getfastaBed.xml @ 23:13400f3c3ec5 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6418f2e58def1a81b3aa7c04cb5dc33decea1a96
author iuc
date Fri, 09 Feb 2018 09:00:06 -0500
parents 7308cc546a36
children 95a3b2c25bd1
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22:bd7721ad15aa 23:13400f3c3ec5
1 <tool id="bedtools_getfastabed" name="GetFastaBed" version="@WRAPPER_VERSION@.0"> 1 <tool id="bedtools_getfastabed" name="GetFastaBed" version="@WRAPPER_VERSION@.1">
2 <description>use intervals to extract sequences from a FASTA file</description> 2 <description>use intervals to extract sequences from a FASTA file</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
32 <when value="history"> 32 <when value="history">
33 <param name="fasta" format="fasta" type="data" label="Fasta file" /> 33 <param name="fasta" format="fasta" type="data" label="Fasta file" />
34 </when> 34 </when>
35 <when value="preloaded"> 35 <when value="preloaded">
36 <param name="fasta_id" type="select"> 36 <param name="fasta_id" type="select">
37 <options from_data_table="all_fasta" /> 37 <options from_data_table="fasta_indexes" />
38 </param> 38 </param>
39 </when> 39 </when>
40 </conditional> 40 </conditional>
41 <param name="name" type="boolean" checked="false" truevalue="-name" falsevalue="" 41 <param name="name" type="boolean" checked="false" truevalue="-name" falsevalue=""
42 label="Use the 'name' column in the BED file for the FASTA headers in the output FASTA file" 42 label="Use the 'name' column in the BED file for the FASTA headers in the output FASTA file"