comparison flankBed.xml @ 4:607c0576c6ab draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316

3:2cd7e321d259

<tool id="bedtools_flankbed" name="FlankBed" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />

    <inputs>
        <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
        <expand macro="genome" />
        <param name="pct" type="boolean" checked="false" truevalue="-pct" falsevalue=""
            label="Define -l and -r as a fraction of the feature’s length"
            help="E.g. if used on a 1000bp feature, -l 0.50, will add 500 bp “upstream”" />
        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue=""
            label="Define -l and -r based on strand"
            help="For example. if used, -l 500 for a negative-stranded feature, it will add 500 bp to the end coordinate" />
        <expand macro="addition" />
    </inputs>
    <outputs>
        <data metadata_source="input" format_source="input" name="output" />
    </outputs>

4:607c0576c6ab

<tool id="bedtools_flankbed" name="FlankBed" version="@WRAPPER_VERSION@.0">
    <description>create new intervals from the flanks of existing intervals</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />

    <inputs>
        <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
        <expand macro="genome" />
        <param name="pct" type="boolean" checked="false" truevalue="-pct" falsevalue=""
            label="Define -l and -r as a fraction of the feature’s length"
            help="E.g. if used on a 1000bp feature, -l 0.50, will add 500 bp “upstream”. (-pct)" />
        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue=""
            label="Define -l and -r based on strand"
            help="For example. if used, -l 500 for a negative-stranded feature, it will add 500 bp to the end coordinate. (-s)" />
        <expand macro="addition" />
    </inputs>
    <outputs>
        <data metadata_source="input" format_source="input" name="output" />
    </outputs>