Mercurial > repos > iuc > bedtools
comparison mapBed.xml @ 4:607c0576c6ab draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316
| author | iuc |
|---|---|
| date | Wed, 27 Jan 2016 15:15:59 -0500 |
| parents | 2cd7e321d259 |
| children | 7308cc546a36 |
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| 3:2cd7e321d259 | 4:607c0576c6ab |
|---|---|
| 1 <tool id="bedtools_map" name="MapBed" version="@WRAPPER_VERSION@.1"> | 1 <tool id="bedtools_map" name="MapBed" version="@WRAPPER_VERSION@.1"> |
| 2 <description></description> | 2 <description>apply a function to a column for each overlapping interval</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 39 <param name="genome_choose" type="boolean" checked="false" truevalue="-g" falsevalue="" | 39 <param name="genome_choose" type="boolean" checked="false" truevalue="-g" falsevalue="" |
| 40 label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." help="(-g)" /> | 40 label="Treat split/spliced BAM or BED12 entries as distinct BED intervals when computing coverage." help="(-g)" /> |
| 41 <when value="-g"> | 41 <when value="-g"> |
| 42 <expand macro="genome" /> | 42 <expand macro="genome" /> |
| 43 </when> | 43 </when> |
| 44 <when value="" /> | |
| 44 </conditional> | 45 </conditional> |
| 45 </inputs> | 46 </inputs> |
| 46 <outputs> | 47 <outputs> |
| 47 <data format_source="inputA" name="output" metadata_source="inputA" label="Mapping of ${inputB.name} into ${inputA.name}"/> | 48 <data format_source="inputA" name="output" metadata_source="inputA" label="Mapping of ${inputB.name} into ${inputA.name}"/> |
| 48 </outputs> | 49 </outputs> |