Mercurial > repos > iuc > bedtools
comparison intersectBed.xml @ 28:6283d16e40ed draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 393e1fef41cfb7e28005a98fd5043a3f42347686
| author | iuc |
|---|---|
| date | Sun, 24 Jun 2018 11:52:38 -0400 |
| parents | 95a3b2c25bd1 |
| children | 4f7a5ccd2ae9 |
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| 27:a33db97b220c | 28:6283d16e40ed |
|---|---|
| 1 <tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.1"> | 1 <tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.2"> |
| 2 <description>find overlapping intervals in various ways</description> | 2 <description>find overlapping intervals in various ways</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command> | 8 <command> |
| 9 <![CDATA[ | 9 <![CDATA[ |
| 10 #set modes = ' '.join( str($overlap_mode).split(',') ) | 10 #set modes = ' '.join( str($overlap_mode).split(',') ) |
| 11 | |
| 12 #if $modes == "None": | |
| 13 #set modes = '' | |
| 14 #end if | |
| 11 | 15 |
| 12 bedtools intersect | 16 bedtools intersect |
| 13 #if $inputA.is_of_type('bam'): | 17 #if $inputA.is_of_type('bam'): |
| 14 -abam '${inputA}' | 18 -abam '${inputA}' |
| 15 #else: | 19 #else: |