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comparison getfastaBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents c78cf6fe3018
children 13400f3c3ec5
comparison
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10:c78cf6fe3018 11:7308cc546a36
22 -fo '$output' 22 -fo '$output'
23 ]]> 23 ]]>
24 </command> 24 </command>
25 <inputs> 25 <inputs>
26 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file" /> 26 <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file" />
27
28 <conditional name="fasta_source"> 27 <conditional name="fasta_source">
29 <param name="fasta_source_selector" type="select" label="Choose the source for the fasta file"> 28 <param name="fasta_source_selector" type="select" label="Choose the source for the fasta file">
30 <option value="history" selected="True">History</option> 29 <option value="history" selected="True">History</option>
31 <option value="preloaded">Server indexed files</option> 30 <option value="preloaded">Server indexed files</option>
32 </param> 31 </param>
34 <param name="fasta" format="fasta" type="data" label="Fasta file" /> 33 <param name="fasta" format="fasta" type="data" label="Fasta file" />
35 </when> 34 </when>
36 <when value="preloaded"> 35 <when value="preloaded">
37 <param name="fasta_id" type="select"> 36 <param name="fasta_id" type="select">
38 <options from_data_table="all_fasta" /> 37 <options from_data_table="all_fasta" />
39 </param> 38 </param>
40 </when> 39 </when>
41 </conditional> 40 </conditional>
42 <param name="name" type="boolean" checked="false" truevalue="-name" falsevalue="" 41 <param name="name" type="boolean" checked="false" truevalue="-name" falsevalue=""
43 label="Use the 'name' column in the BED file for the FASTA headers in the output FASTA file" 42 label="Use the 'name' column in the BED file for the FASTA headers in the output FASTA file"
44 help="(-name)" /> 43 help="(-name)" />