Mercurial > repos > iuc > bedtools

comparison macros.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents 607c0576c6ab
children fadebae7e69b
comparison
equal deleted inserted replaced
10:c78cf6fe3018 11:7308cc546a36
1 <macros> 1 <macros>
2 <xml name="requirements"> 2 <xml name="requirements">
3 <requirements> 3 <requirements>
4 <requirement type="package" version="2.24">bedtools</requirement> 4 <requirement type="package" version="2.26.0gx">bedtools</requirement>
5 <yield/> 5 <yield/>
6 </requirements> 6 </requirements>
7 </xml> 7 </xml>
8 <token name="@WRAPPER_VERSION@">2.24</token> 8 <token name="@WRAPPER_VERSION@">2.26.0</token>
9 <xml name="stdio"> 9 <xml name="stdio">
10 <stdio> 10 <stdio>
11 <!-- Anything other than zero is an error --> 11 <!-- Anything other than zero is an error -->
12 <exit_code range="1:" /> 12 <exit_code range="1:" />
13 <exit_code range=":-1" /> 13 <exit_code range=":-1" />
53 <param format="tabular" name="genome" type="data" label="Genome file" /> 53 <param format="tabular" name="genome" type="data" label="Genome file" />
54 <!--TODO: make use of: ${chromInfo} --> 54 <!--TODO: make use of: ${chromInfo} -->
55 </xml> 55 </xml>
56 <xml name="closest_D_option"> 56 <xml name="closest_D_option">
57 <param name="iu" type="boolean" checked="false" truevalue="-iu" falsevalue="" 57 <param name="iu" type="boolean" checked="false" truevalue="-iu" falsevalue=""
58 label="Ignore features in B that are upstream of features in A" 58 label="Ignore features in B that are upstream of features in A"
59 help="This option requires -D and follows its orientation rules for determining what is 'upstream'. (-iu)" /> 59 help="This option requires -D and follows its orientation rules for determining what is 'upstream'. (-iu)" />
60 60
61 <param name="id" type="boolean" checked="false" truevalue="-id" falsevalue="" 61 <param name="id" type="boolean" checked="false" truevalue="-id" falsevalue=""
62 label="Ignore features in B that are downstream of features in A" 62 label="Ignore features in B that are downstream of features in A"
63 help="This option requires -D and follows its orientation rules for determining what is 'downstream'. (-id)" /> 63 help="This option requires -D and follows its orientation rules for determining what is 'downstream'. (-id)" />
64 64
65 <param name="fu" type="boolean" checked="false" truevalue="-fu" falsevalue="" 65 <param name="fu" type="boolean" checked="false" truevalue="-fu" falsevalue=""
66 label="Choose first from features in B that are upstream of features in A" 66 label="Choose first from features in B that are upstream of features in A"
67 help="This option requires -D and follows its orientation rules for determining what is 'upstream'. (-fu)" /> 67 help="This option requires -D and follows its orientation rules for determining what is 'upstream'. (-fu)" />
68 68
69 <param name="fd" type="boolean" checked="false" truevalue="-fd" falsevalue="" 69 <param name="fd" type="boolean" checked="false" truevalue="-fd" falsevalue=""
70 label="Choose first from features in B that are downstream of features in A" 70 label="Choose first from features in B that are downstream of features in A"
71 help="This option requires -D and follows its orientation rules for determining what is 'downstream'. (-fd)" /> 71 help="This option requires -D and follows its orientation rules for determining what is 'downstream'. (-fd)" />
72 </xml> 72 </xml>
73 <xml name="addition"> 73 <xml name="addition">
74 <conditional name="addition"> 74 <conditional name="addition">
75 <param name="addition_select" type="select" label="Choose what you want to do"> 75 <param name="addition_select" type="select" label="Choose what you want to do">