Mercurial > repos > iuc > bedtools
comparison makeWindowsBed.xml @ 11:7308cc546a36 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
| author | iuc |
|---|---|
| date | Mon, 17 Oct 2016 10:13:35 -0400 |
| parents | 607c0576c6ab |
| children | 44867b59dbf2 |
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| 10:c78cf6fe3018 | 11:7308cc546a36 |
|---|---|
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command> | 8 <command> |
| 9 <![CDATA[ | 9 <![CDATA[ |
| 10 bedtools makewindows | 10 bedtools makewindows |
| 11 #if $type.type_select == 'genome': | 11 #if $type.type_select == 'genome': |
| 12 -g $type.genome | 12 -g '$type.genome' |
| 13 #else: | 13 #else: |
| 14 -b $type.input | 14 -b '$type.input' |
| 15 #end if | 15 #end if |
| 16 #if $action.action_select == 'windowsize': | 16 #if $action.action_select == 'windowsize': |
| 17 -w $action.windowsize | 17 -w $action.windowsize |
| 18 #if $action.step_size.step_size_select == 'yes': | 18 #if $action.step_size.step_size_select == 'yes': |
| 19 -s $action.step_size.step_size | 19 -s $action.step_size.step_size |
| 21 #else: | 21 #else: |
| 22 -n $action.number | 22 -n $action.number |
| 23 -s $action.step_size | 23 -s $action.step_size |
| 24 #end if | 24 #end if |
| 25 $sourcename | 25 $sourcename |
| 26 > $output | 26 > '$output' |
| 27 ]]> | 27 ]]> |
| 28 </command> | 28 </command> |
| 29 <inputs> | 29 <inputs> |
| 30 <conditional name="type"> | 30 <conditional name="type"> |
| 31 <param name="type_select" type="select" label="Work with"> | 31 <param name="type_select" type="select" label="Work with"> |