comparison multiIntersectBed.xml @ 11:7308cc546a36 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811

10:c78cf6fe3018

                    <param name="custom_name" type="text" area="false" label="Custom sample name"/>
                </repeat>
            </when>
        </conditional>
        <expand macro="genome" />
        <param name="cluster" type="boolean" checked="false" truevalue="-cluster" falsevalue="" 
            label="Invoke Ryan Layers's clustering algorithm"
            help="(-cluster)" />
        <param name="zero" type="boolean" checked="true"
            label="Report regions that are not covered by any of the files"
            help="If set, regions that are not overlapped by any file will also be reported. Requires a valid organism key for all input datasets" />

    # a.bed
    chr1  6   12bed
    chr1  10  20
    chr1  22  27
    chr1  24  30
    
    # b.bed
    chr1  12  32
    chr1  14  30
    
    # c.bed
    chr1  8   15
    chr1  10  14
    chr1  32  34

11:7308cc546a36

                    <param name="custom_name" type="text" area="false" label="Custom sample name"/>
                </repeat>
            </when>
        </conditional>
        <expand macro="genome" />
        <param name="cluster" type="boolean" checked="false" truevalue="-cluster" falsevalue=""
            label="Invoke Ryan Layers's clustering algorithm"
            help="(-cluster)" />
        <param name="zero" type="boolean" checked="true"
            label="Report regions that are not covered by any of the files"
            help="If set, regions that are not overlapped by any file will also be reported. Requires a valid organism key for all input datasets" />

    # a.bed
    chr1  6   12bed
    chr1  10  20
    chr1  22  27
    chr1  24  30

    # b.bed
    chr1  12  32
    chr1  14  30

    # c.bed
    chr1  8   15
    chr1  10  14
    chr1  32  34