comparison annotateBed.xml @ 41:7ab85ac5f64b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"

40:a68aa6c1204a

<tool id="bedtools_annotatebed" name="bedtools AnnotateBed" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>annotate coverage of features from multiple files</description>
    <expand macro="bio_tools" />
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
bedtools annotate
-i '${inputA}'

    </outputs>
    <tests>
        <test>
            <param name="inputA" value="annotateBed1.bed" ftype="bed" />
            <param name="names_select" value="no" />
            <param name="beds" value="annotateBed2.bed,annotateBed3.bed,annotateBed4.bed" />
            <output name="output" file="annotateBed_result.bed" ftype="bed" />
        </test>
    </tests>
    <help><![CDATA[
**What it does**

41:7ab85ac5f64b

<tool id="bedtools_annotatebed" name="bedtools AnnotateBed" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>annotate coverage of features from multiple files</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
bedtools annotate
-i '${inputA}'

    </outputs>
    <tests>
        <test>
            <param name="inputA" value="annotateBed1.bed" ftype="bed" />
            <param name="names_select" value="no" />
            <param name="beds" value="annotateBed2.bed,annotateBed3.bed,annotateBed4.bed"/>
            <output name="output" file="annotateBed_result.bed" ftype="bed" />
        </test>
    </tests>
    <help><![CDATA[
**What it does**