Mercurial > repos > iuc > bedtools
comparison groupbyBed.xml @ 41:7ab85ac5f64b draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"
| author | iuc |
|---|---|
| date | Thu, 04 Nov 2021 11:36:55 +0000 |
| parents | 3e38c9b3214f |
| children |
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| 40:a68aa6c1204a | 41:7ab85ac5f64b |
|---|---|
| 1 <tool id="bedtools_groupbybed" name="bedtools GroupByBed" version="@TOOL_VERSION@" profile="@PROFILE@"> | 1 <tool id="bedtools_groupbybed" name="bedtools GroupByBed" version="@TOOL_VERSION@" profile="@PROFILE@"> |
| 2 <description>group by common cols and summarize other cols</description> | 2 <description>group by common cols and summarize other cols</description> |
| 3 <expand macro="bio_tools" /> | |
| 4 <macros> | 3 <macros> |
| 5 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 6 </macros> | 5 </macros> |
| 6 <expand macro="bio_tools" /> | |
| 7 <expand macro="requirements" /> | 7 <expand macro="requirements" /> |
| 8 <expand macro="stdio" /> | 8 <expand macro="stdio" /> |
| 9 <command><![CDATA[ | 9 <command><![CDATA[ |
| 10 bedtools groupby | 10 bedtools groupby |
| 11 -i '${inputA}' | 11 -i '${inputA}' |
| 23 <sanitizer invalid_char=""> | 23 <sanitizer invalid_char=""> |
| 24 <valid initial="string.digits"><add value=","/><add value="-"/></valid> | 24 <valid initial="string.digits"><add value=","/><add value="-"/></valid> |
| 25 </sanitizer> | 25 </sanitizer> |
| 26 </param> | 26 </param> |
| 27 <param name="operation" argument="-o" type="select" label="Specify the operation"> | 27 <param name="operation" argument="-o" type="select" label="Specify the operation"> |
| 28 <option value="sum" selected="true">Sum - numeric only</option> | 28 <!-- <option value="sum" selected="true">Sum - numeric only</option> This is already in math--> |
| 29 <option value="stdev">Stdev - numeric only</option> | 29 <option value="stdev">Stdev - numeric only</option> |
| 30 <option value="sstdev">Sstdev - numeric only</option> | 30 <option value="sstdev">Sstdev - numeric only</option> |
| 31 <option value="freqasc">Freqasc - comma separated list of values observed and the number of times they were observed (ascending)</option> | 31 <option value="freqasc">Freqasc - comma separated list of values observed and the number of times they were observed (ascending)</option> |
| 32 <option value="freqdesc">Freqdesc - comma separated list of values observed and the number of times they were observed (descending)</option> | 32 <option value="freqdesc">Freqdesc - comma separated list of values observed and the number of times they were observed (descending)</option> |
| 33 <option value="first">First - numeric or text</option> | 33 <option value="first">First - numeric or text</option> |