comparison randomBed.xml @ 41:7ab85ac5f64b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 500a03281ea704abc7a16d9af63d67dbdcc5cd0b"

40:a68aa6c1204a

<tool id="bedtools_randombed" name="bedtools RandomBed" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>generate random intervals in a genome</description>
    <expand macro="bio_tools" />
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
bedtools random
-g @GENOME_FILE@

        <data name="output" format="bed" />
    </outputs>
    <tests>
        <test>
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="mm9_chr1.len" />
            <param name="seed_choose" value="False" />
            <param name="length" value="5" />
            <param name="intervals" value="3" />
            <output name="output">
                <assert_contents>

41:7ab85ac5f64b

<tool id="bedtools_randombed" name="bedtools RandomBed" version="@TOOL_VERSION@" profile="@PROFILE@">
    <description>generate random intervals in a genome</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command><![CDATA[
bedtools random
-g @GENOME_FILE@

        <data name="output" format="bed" />
    </outputs>
    <tests>
        <test>
            <param name="genome_file_opts_selector" value="hist" />
            <param name="genome" value="mm9_chr1.len" ftype="tabular" />
            <param name="seed_choose" value="False" />
            <param name="length" value="5" />
            <param name="intervals" value="3" />
            <output name="output">
                <assert_contents>