comparison bed12ToBed6.xml @ 1:82aac94b06c3 draft

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1:82aac94b06c3

<tool id="bedtools_bed12tobed6" name="BED12 to BED6" version="@WRAPPER_VERSION@.0">
    <description>converter</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command>
<![CDATA[
        bed12ToBed6
        -i '$input'
        > '$output'
]]>
    </command>
    <inputs>
        <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/>
    </inputs>
    <outputs>
        <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/>
    </outputs>
    <tests>
        <test>
            <param name="input" value="bed12.bed" ftype="bed" />
            <output name="output" file="bed12ToBed6_result1.bed" ftype="bed" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**

bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon).

@REFERENCES@
]]>
    </help>
    <expand macro="citations" />
</tool>