Mercurial > repos > iuc > bedtools
comparison annotateBed.xml @ 26:95a3b2c25bd1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author | iuc |
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date | Thu, 26 Apr 2018 17:02:46 -0400 |
parents | 7308cc546a36 |
children | 4f7a5ccd2ae9 |
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25:e36671a0f646 | 26:95a3b2c25bd1 |
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31 $both | 31 $both |
32 > "${output}" | 32 > "${output}" |
33 ]]> | 33 ]]> |
34 </command> | 34 </command> |
35 <inputs> | 35 <inputs> |
36 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file" /> | 36 <param format="@STD_BEDTOOLS_INPUTS@" name="inputA" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file" /> |
37 <!-- Additional files, if the user needs more --> | 37 <!-- Additional files, if the user needs more --> |
38 <conditional name="names"> | 38 <conditional name="names"> |
39 <param name="names_select" type="select" label="Specify names for each file"> | 39 <param name="names_select" type="select" label="Specify names for each file"> |
40 <option value="no" selected="True">No</option> | 40 <option value="no" selected="True">No</option> |
41 <option value="yes">Yes</option> | 41 <option value="yes">Yes</option> |
71 </tests> | 71 </tests> |
72 <help> | 72 <help> |
73 <![CDATA[ | 73 <![CDATA[ |
74 **What it does** | 74 **What it does** |
75 | 75 |
76 bedtools annotate, well, annotates one BED/VCF/GFF file with the coverage and number of overlaps observed from multiple other BED/VCF/GFF files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command. | 76 bedtools annotate, well, annotates one @STD_BEDTOOLS_INPUT_LABEL@ file with the coverage and number of overlaps observed from multiple other @STD_BEDTOOLS_INPUT_LABEL@ files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command. |
77 | 77 |
78 @REFERENCES@ | 78 @REFERENCES@ |
79 ]]> | 79 ]]> |
80 </help> | 80 </help> |
81 <expand macro="citations" /> | 81 <expand macro="citations" /> |