comparison annotateBed.xml @ 26:95a3b2c25bd1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59

25:e36671a0f646

        $both
        > "${output}"
]]>
    </command>
    <inputs>
        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file" />
        <!-- Additional files, if the user needs more -->
         <conditional name="names">
            <param name="names_select" type="select" label="Specify names for each file">
                <option value="no" selected="True">No</option>
                <option value="yes">Yes</option>

    </tests>
    <help>
<![CDATA[
**What it does**

bedtools annotate, well, annotates one BED/VCF/GFF file with the coverage and number of overlaps observed from multiple other BED/VCF/GFF files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command.

@REFERENCES@
]]>
    </help>
    <expand macro="citations" />

26:95a3b2c25bd1

        $both
        > "${output}"
]]>
    </command>
    <inputs>
        <param format="@STD_BEDTOOLS_INPUTS@" name="inputA" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file" />
        <!-- Additional files, if the user needs more -->
         <conditional name="names">
            <param name="names_select" type="select" label="Specify names for each file">
                <option value="no" selected="True">No</option>
                <option value="yes">Yes</option>

    </tests>
    <help>
<![CDATA[
**What it does**

bedtools annotate, well, annotates one @STD_BEDTOOLS_INPUT_LABEL@ file with the coverage and number of overlaps observed from multiple other @STD_BEDTOOLS_INPUT_LABEL@ files. In this way, it allows one to ask to what degree one feature coincides with multiple other feature types with a single command.

@REFERENCES@
]]>
    </help>
    <expand macro="citations" />