Mercurial > repos > iuc > bedtools
comparison bedpeToBam.xml @ 26:95a3b2c25bd1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author | iuc |
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date | Thu, 26 Apr 2018 17:02:46 -0400 |
parents | a8eabd2838f6 |
children | 4f7a5ccd2ae9 |
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25:e36671a0f646 | 26:95a3b2c25bd1 |
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13 -g @GENOME_FILE@ | 13 -g @GENOME_FILE@ |
14 > '$output' | 14 > '$output' |
15 ]]> | 15 ]]> |
16 </command> | 16 </command> |
17 <inputs> | 17 <inputs> |
18 <param name="input" format="bed,gff,vcf" type="data" label="BED/VCF/GFF file"/> | 18 <param name="input" format="bed,gff,vcf" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> |
19 <expand macro="input_conditional_genome_file" /> | 19 <expand macro="input_conditional_genome_file" /> |
20 <param name="mapq" type="integer" value="255" | 20 <param name="mapq" type="integer" value="255" |
21 label="Set a mapping quality (SAM MAPQ field) value for all BED entries" | 21 label="Set a mapping quality (SAM MAPQ field) value for all BED entries" |
22 help="(-mapq)" /> | 22 help="(-mapq)" /> |
23 </inputs> | 23 </inputs> |