comparison complementBed.xml @ 26:95a3b2c25bd1 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59

25:e36671a0f646

        -g @GENOME_FILE@
        > "$output"
]]>
    </command>
    <inputs>
        <param format="bed,vcf,gff,gff3" name="input" type="data" label="BED/VCF/GFF file"/>
        <expand macro="input_conditional_genome_file" />
    </inputs>
    <outputs>
        <data format_source="input" name="output" metadata_source="input" label="Complement of ${input.name}"/>
    </outputs>

    </tests>
    <help>
<![CDATA[
**What it does**

bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.

.. image:: $PATH_TO_IMAGES/complement-glyph.png

@REFERENCES@
]]>

26:95a3b2c25bd1

        -g @GENOME_FILE@
        > "$output"
]]>
    </command>
    <inputs>
        <param format="@STD_BEDTOOLS_INPUTS@" name="input" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/>
        <expand macro="input_conditional_genome_file" />
    </inputs>
    <outputs>
        <data format_source="input" name="output" metadata_source="input" label="Complement of ${input.name}"/>
    </outputs>

    </tests>
    <help>
<![CDATA[
**What it does**

bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input @STD_BEDTOOLS_INPUT_LABEL@ file.

.. image:: $PATH_TO_IMAGES/complement-glyph.png

@REFERENCES@
]]>