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comparison mergeBed.xml @ 26:95a3b2c25bd1 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author iuc
date Thu, 26 Apr 2018 17:02:46 -0400
parents 7308cc546a36
children 4f7a5ccd2ae9
comparison
equal deleted inserted replaced
25:e36671a0f646 26:95a3b2c25bd1
15 @C_AND_O_ARGUMENT@ 15 @C_AND_O_ARGUMENT@
16 > "${output}" 16 > "${output}"
17 ]]> 17 ]]>
18 </command> 18 </command>
19 <inputs> 19 <inputs>
20 <param name="input" format="bam,bed,gff,vcf" type="data" label="Sort the following BAM/BED/VCF/GFF file"/> 20 <param name="input" format="bam,@STD_BEDTOOLS_INPUTS@" type="data" label="Sort the following BAM/@STD_BEDTOOLS_INPUT_LABEL@ file"/>
21 <param name="strand" type="select" label="Calculation based on strandedness?"> 21 <param name="strand" type="select" label="Calculation based on strandedness?">
22 <option value="" selected="True">Overlaps on either strand</option> 22 <option value="" selected="True">Overlaps on either strand</option>
23 <option value="-s">Force strandedness. That is, only merge features that are the same strand.</option> 23 <option value="-s">Force strandedness. That is, only merge features that are the same strand.</option>
24 <option value="-S +">Force merge for forward strand only.</option> 24 <option value="-S +">Force merge for forward strand only.</option>
25 <option value="-S -">Force merge for reverse strand only.</option> 25 <option value="-S -">Force merge for reverse strand only.</option>