Mercurial > repos > iuc > bedtools
comparison windowBed.xml @ 26:95a3b2c25bd1 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b75b9e79cf3186a22dc2e1e9d27c1a080b891b59
author | iuc |
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date | Thu, 26 Apr 2018 17:02:46 -0400 |
parents | fadebae7e69b |
children | 4f7a5ccd2ae9 |
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25:e36671a0f646 | 26:95a3b2c25bd1 |
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28 $header | 28 $header |
29 > '$output' | 29 > '$output' |
30 ]]> | 30 ]]> |
31 </command> | 31 </command> |
32 <inputs> | 32 <inputs> |
33 <param format="bed,bam,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF/BAM file"/> | 33 <param format="bam,@STD_BEDTOOLS_INPUTS@" name="inputA" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@/BAM file"/> |
34 <param format="bed,gff,vcf,gff3" name="inputB" type="data" label="BED/VCF/GFF file"/> | 34 <param format="@STD_BEDTOOLS_INPUTS@" name="inputB" type="data" label="@STD_BEDTOOLS_INPUT_LABEL@ file"/> |
35 <param name="bed" type="boolean" checked="false" truevalue="-bed" falsevalue="" | 35 <param name="bed" type="boolean" checked="false" truevalue="-bed" falsevalue="" |
36 label="When using BAM input, write output as BED. The default is to write output in BAM when using a bam file" | 36 label="When using BAM input, write output as BED. The default is to write output in BAM when using a bam file" |
37 help="(-bed)" /> | 37 help="(-bed)" /> |
38 <conditional name="addition"> | 38 <conditional name="addition"> |
39 <param name="addition_select" type="select" label="Choose what you want to do"> | 39 <param name="addition_select" type="select" label="Choose what you want to do"> |