Mercurial > repos > iuc > bedtools
comparison Bed12ToBed6.xml @ 0:b8348686a0b9 draft
Imported from capsule None
author | iuc |
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date | Tue, 04 Nov 2014 01:45:04 -0500 |
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-1:000000000000 | 0:b8348686a0b9 |
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1 <tool id="bedtools_bed12tobed6" name="Convert from BED12 to BED6" version="@WRAPPER_VERSION@.0"> | |
2 <description></description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 </macros> | |
6 <expand macro="requirements" /> | |
7 <expand macro="stdio" /> | |
8 <command> | |
9 bed12ToBed16 | |
10 -i '$input' | |
11 > '$output' | |
12 </command> | |
13 <inputs> | |
14 <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/> | |
15 </inputs> | |
16 <outputs> | |
17 <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/> | |
18 </outputs> | |
19 <help> | |
20 | |
21 **What it does** | |
22 | |
23 bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon). | |
24 | |
25 @REFERENCES@ | |
26 </help> | |
27 <expand macro="citations" /> | |
28 </tool> |