Mercurial > repos > iuc > bedtools
comparison closestBed.xml @ 6:d25966c8ddeb draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6ce9a5a91d803b9ac9e743d9721ff0ccd2a5a59f-dirty
| author | iuc |
|---|---|
| date | Sun, 22 May 2016 12:33:32 -0400 |
| parents | f8b7dc21b4ee |
| children | 7308cc546a36 |
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| 5:f8b7dc21b4ee | 6:d25966c8ddeb |
|---|---|
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
| 7 <expand macro="stdio" /> | 7 <expand macro="stdio" /> |
| 8 <command> | 8 <command> |
| 9 <![CDATA[ | 9 <![CDATA[ |
| 10 #set inputBs = ' '.join( [ str( $file ) for $file in $inputB ] ) | 10 #set inputBs = "' '".join([str( $file ) for $file in $inputB]) |
| 11 | 11 |
| 12 closestBed | 12 closestBed |
| 13 $strand | 13 $strand |
| 14 $addition | 14 $addition |
| 15 #if $addition2.addition2_select: | 15 #if $addition2.addition2_select: |
| 21 -mdb $mdb | 21 -mdb $mdb |
| 22 -t $ties | 22 -t $ties |
| 23 #if $k: | 23 #if $k: |
| 24 -k $k | 24 -k $k |
| 25 #end if | 25 #end if |
| 26 -a $inputA | 26 -a '$inputA' |
| 27 -b $inputBs | 27 -b '$inputBs' |
| 28 > $output | 28 > $output |
| 29 ]]> | 29 ]]> |
| 30 </command> | 30 </command> |
| 31 <inputs> | 31 <inputs> |
| 32 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> | 32 <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/> |