Mercurial > repos > iuc > bedtools
comparison flankBed.xml @ 30:db1841942d2b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit b67e138b17f7e8cb34f59bed0925f691ec9740f3
| author | iuc |
|---|---|
| date | Fri, 17 Aug 2018 05:42:39 -0400 |
| parents | 95a3b2c25bd1 |
| children | 4f7a5ccd2ae9 |
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| 29:6bb3cd018203 | 30:db1841942d2b |
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| 63 | 63 |
| 64 .. image:: $PATH_TO_IMAGES/flank-glyph.png | 64 .. image:: $PATH_TO_IMAGES/flank-glyph.png |
| 65 | 65 |
| 66 .. class:: warningmark | 66 .. class:: warningmark |
| 67 | 67 |
| 68 In order to prevent creating intervals that violate chromosome boundaries, bedtools flank requires a genome file defining the length of each chromosome or contig. | 68 In order to prevent creating intervals that violate chromosome boundaries, bedTools flank requires a bedTool genome file defining the length of each chromosome or contig. . This should be a two column tabular file with the chromosome name in the first column and the END coordinate of the chromosome in the second column. |
| 69 | |
| 70 If you need this data for any genome that is at UCSC (http://genome.ucsc.edu), it can be extracted from the Table Browser with the "Get Data: UCSC Main" tool. Set "group" to "All Tables", "table" to "chromInfo", and "output format" to "all fields from selected table". | |
| 71 | |
| 72 | |
| 69 | 73 |
| 70 @REFERENCES@ | 74 @REFERENCES@ |
| 71 ]]> | 75 ]]> |
| 72 </help> | 76 </help> |
| 73 <expand macro="citations" /> | 77 <expand macro="citations" /> |