comparison bamToFastq.xml @ 16:e0cec48a4695 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit ea1ac33f3337ac44f43150f585c9ccd38e08da0c

15:b73962f8fcbf

        <param name="fq2" type="boolean" truevalue="-fq2" falsevalue="" checked="False" label="FASTQ for second end.
            Used if BAM contains paired-end data. BAM should be sorted by query name if creating paired FASTQ with this option."/>
    </inputs>
    <outputs>
        <data format="fastq" name="output" metadata_source="input" label="${input.name} (as FASTQ)"/>
        <data format="fastq2" name="output2" metadata_source="input" label="${input.name} (as FASTQ)">
            <filter>fq2 is True</filter>
        </data>
    </outputs>
<help>

16:e0cec48a4695

        <param name="fq2" type="boolean" truevalue="-fq2" falsevalue="" checked="False" label="FASTQ for second end.
            Used if BAM contains paired-end data. BAM should be sorted by query name if creating paired FASTQ with this option."/>
    </inputs>
    <outputs>
        <data format="fastq" name="output" metadata_source="input" label="${input.name} (as FASTQ)"/>
        <data format="fastq" name="output2" metadata_source="input" label="${input.name} (as FASTQ)">
            <filter>fq2 is True</filter>
        </data>
    </outputs>
<help>