comparison intersectBed.xml @ 13:fadebae7e69b draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 391d2d41095edb2badf70924d3636238453ee377

12:7b3aaff0d78c

<![CDATA[
        #set inputBs = '" "'.join( [ str( $file ) for $file in $inputB ] )
        #set modes = ' '.join( str($overlap_mode).split(',') )

        bedtools intersect
            #if $inputA.ext == "bam":
                -abam "${inputA}"
            #else:
                -a "${inputA}"
            #end if

13:fadebae7e69b

<![CDATA[
        #set inputBs = '" "'.join( [ str( $file ) for $file in $inputB ] )
        #set modes = ' '.join( str($overlap_mode).split(',') )

        bedtools intersect
            #if $inputA.is_of_type('bam'):
                -abam "${inputA}"
            #else:
                -a "${inputA}"
            #end if