comparison bedpeToBam.xml @ 46:64e2edfe7a2c draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 3e7bf5ae62de3520635d75e3825701960b9722e4

45:a1a923cd89e8

<tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
    <description>converter</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />
    <!-- bedtobam broken in 2.29.0 <expand macro="requirements" /> -->
    <requirements>
        <requirement type="package" version="2.27.1">bedtools</requirement>
    </requirements>
    <expand macro="stdio" />
    <command><![CDATA[
bedtools bedpetobam
-mapq $mapq

46:64e2edfe7a2c

<tool id="bedtools_bedpetobam" name="bedtools BEDPE to BAM" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@">
    <description>converter</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="bio_tools" />
    <!-- bedtobam broken in 2.29.0 <expand macro="requirements" /> -->
    <requirements>
        <requirement type="package" version="2.31.1">bedtools</requirement>
    </requirements>
    <expand macro="stdio" />
    <command><![CDATA[
bedtools bedpetobam
-mapq $mapq