Mercurial > repos > iuc > bedtools
diff test-data/dbkeys.loc @ 43:07e8b80f278c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit db0b91a784ca0c216345bc488d7d488babf1b53f"
| author | iuc |
|---|---|
| date | Fri, 01 Apr 2022 19:02:51 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/dbkeys.loc Fri Apr 01 19:02:51 2022 +0000 @@ -0,0 +1,14 @@ +#This file lists the locations and dbkeys of all the genome files +#See here for details: http://bedtools.readthedocs.io/en/latest/content/general-usage.html#genome-file-format +#You can add elements to this data table using the data_manager_fetch_genome_dbkeys_all_fasta data manager. +#Alternatively, index files created using samtools faidx (http://www.htslib.org/doc/faidx.html) contain 3 extra columns, but work fine. +#This file has the format (white space characters are TAB characters): +# +#<dbkey> <display_name> <file_path> +# +#So, dbkeys.loc could look something like this: +# +#apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.len +#hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.len +# +mm9 Mus Musculus ${__HERE__}/mm9.len \ No newline at end of file