diff annotateBed.xml @ 4:607c0576c6ab draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316

--- a/annotateBed.xml	Wed May 27 12:54:35 2015 -0400
+++ b/annotateBed.xml	Wed Jan 27 15:15:59 2016 -0500
@@ -1,5 +1,5 @@
-<tool id="bedtools_annotatebed" name="AnnotateBed" version="@WRAPPER_VERSION@.0">
-    <description></description>
+<tool id="bedtools_annotatebed" name="AnnotateBed" version="@WRAPPER_VERSION@.1">
+    <description>annotate coverage of features from multiple files</description>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -7,6 +7,7 @@
     <expand macro="stdio" />
     <command>
 <![CDATA[
+
         bedtools annotate
         -i "${inputA}"
         #if $names.names_select == 'yes':
@@ -22,6 +23,8 @@
         #else:
             #set files = '" "'.join( [ str( $file ) for $file in $names.beds ] )
             -files "${files}"
+            #set names = '" "'.join( [ str( $name.display_name ) for $name in $names.beds ] )
+            -names "${names}"
         #end if
         $strand
         $counts