diff genomeCoverageBed.xml @ 4:607c0576c6ab draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 6692e3a4fa1bf6e9a407735afdbb2454ed32b316

--- a/genomeCoverageBed.xml	Wed May 27 12:54:35 2015 -0400
+++ b/genomeCoverageBed.xml	Wed Jan 27 15:15:59 2016 -0500
@@ -1,5 +1,5 @@
 <tool id="bedtools_genomecoveragebed" name="Genome Coverage" version="@WRAPPER_VERSION@.0">
-    <description>in bedGraph or histogram format</description>
+    <description>compute the coverage over an entire genome</description>
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -74,7 +74,7 @@
             label="Report the depth at each genome position with 1-based coordinates" help="(-d)" />
         <param name="dz" type="boolean" checked="False" truevalue="-dz" falsevalue=""
             label="Report the depth at each genome position with 0-based coordinatess" help="(-dz)" />
-        <param name="five" type="boolean" checked="False" truevalue="-d" falsevalue=""
+        <param name="five" type="boolean" checked="False" truevalue="-5" falsevalue=""
             label="Calculate coverage of 5’ positions" help="Instead of entire interval. (-5)" />
         <param name="three" type="boolean" checked="False" truevalue="-3" falsevalue=""
             label="Calculate coverage of 3’ positions" help="Instead of entire interval. (-3)" />