Mercurial > repos > iuc > bedtools

diff groupbyBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents 607c0576c6ab
children 95a3b2c25bd1
line wrap: on
line diff
--- a/groupbyBed.xml	Mon Oct 03 07:36:08 2016 -0400
+++ b/groupbyBed.xml	Mon Oct 17 10:13:35 2016 -0400
@@ -8,17 +8,17 @@
     <command>
 <![CDATA[
         bedtools groupby
+        -i "${inputA}"
+        -g '$group'
         -c "${cols}"
-        -g $group
         -o $operation
-        -i "${inputA}"
         > "${output}"
 ]]>
     </command>
     <inputs>
         <param format="bed" name="inputA" type="data" label="BED file"/>
         <expand macro="choose_columns" />
-        <param name="group" type="text" value="1,2,3" 
+        <param name="group" type="text" value="1,2,3"
             label="Specifies which column(s) (1-based) should be used to group the input"
             help="Columns may be comma-separated with each column must be explicitly listed. Or, ranges (e.g. 1-4) are also allowed. (-g)">
             <sanitizer invalid_char="">