Mercurial > repos > iuc > bedtools

diff jaccardBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents 607c0576c6ab
children 95a3b2c25bd1
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line diff
--- a/jaccardBed.xml	Mon Oct 03 07:36:08 2016 -0400
+++ b/jaccardBed.xml	Mon Oct 17 10:13:35 2016 -0400
@@ -12,9 +12,9 @@
             $split
             $reciprocal
             -f $overlap
-            -a $inputA
-            -b $inputB
-            > $output
+            -a '$inputA'
+            -b '$inputB'
+            > '$output'
 ]]>
     </command>
     <inputs>
@@ -22,7 +22,7 @@
         <param format="bed,vcf,gff,gff3" name="inputB" type="data" label="BED/VCF/GFF file"/>
         <expand macro="overlap" />
         <expand macro="reciprocal" />
-        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue="" 
+        <param name="strand" type="boolean" checked="false" truevalue="-s" falsevalue=""
             label="Force strandedness"
             help="That is, only report hits in B that overlap A on the same strand. By default, overlaps are reported without respect to strand. (-s)" />
         <expand macro="strand2" />