Mercurial > repos > iuc > bedtools

diff shuffleBed.xml @ 11:7308cc546a36 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 19967671ddd4e750f53d71274e5c12325a402811
author iuc
date Mon, 17 Oct 2016 10:13:35 -0400
parents c78cf6fe3018
children 44867b59dbf2
line wrap: on
line diff
--- a/shuffleBed.xml	Mon Oct 03 07:36:08 2016 -0400
+++ b/shuffleBed.xml	Mon Oct 17 10:13:35 2016 -0400
@@ -8,8 +8,8 @@
     <command>
 <![CDATA[
         bedtools shuffle
-        -g $genome
-        -i $inputA
+        -g '$genome'
+        -i '$inputA'
         $bedpe
         #if str($seed.seed_choose) == "True":
             -seed $seed.seed
@@ -25,7 +25,7 @@
         $no_overlap
         $allow_beyond
         -maxTries $maxtries
-        > $output
+        > '$output'
 ]]>
     </command>
     <inputs>