diff bed12ToBed6.xml @ 1:82aac94b06c3 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/bed12ToBed6.xml	Thu Jan 08 14:25:51 2015 -0500
@@ -0,0 +1,37 @@
+<tool id="bedtools_bed12tobed6" name="BED12 to BED6" version="@WRAPPER_VERSION@.0">
+    <description>converter</description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <command>
+<![CDATA[
+        bed12ToBed6
+        -i '$input'
+        > '$output'
+]]>
+    </command>
+    <inputs>
+        <param format="bed" name="input" type="data" label="Convert the following BED12 file to BED6"/>
+    </inputs>
+    <outputs>
+        <data format="bed" name="output" metadata_source="input" label="${input.name} (as BED6)"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="input" value="bed12.bed" ftype="bed" />
+            <output name="output" file="bed12ToBed6_result1.bed" ftype="bed" />
+        </test>
+    </tests>
+    <help>
+<![CDATA[
+**What it does**
+
+bed12ToBed6 is a convenience tool that converts BED features in BED12 (a.k.a. “blocked” BED features such as genes) to discrete BED6 features. For example, in the case of a gene with six exons, bed12ToBed6 would create six separate BED6 features (i.e., one for each exon).
+
+@REFERENCES@
+]]>
+    </help>
+    <expand macro="citations" />
+</tool>