diff complementBed.xml @ 0:b8348686a0b9 draft

Imported from capsule None

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/complementBed.xml	Tue Nov 04 01:45:04 2014 -0500
@@ -0,0 +1,32 @@
+<tool id="bedtools_complementbed" name="ComplementBed" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+    </macros>
+    <expand macro="requirements" />
+    <expand macro="stdio" />
+    <command>
+        complementBed
+        -d $distance
+        -g genome
+        &gt; $output
+    </command>
+    <inputs>
+        <param format="bed,vcf,gff,gff3" name="inputA" type="data" label="BED/VCF/GFF file"/>
+        <expand macro="genome" />
+    </inputs>
+    <outputs>
+        <data format_source="inputA" name="output" metadata_source="inputA" label="Complemen of ${inputA.name}"/>
+    </outputs>
+    <help>
+
+**What it does**
+
+bedtools complement returns all intervals in a genome that are not covered by at least one interval in the input BED/GFF/VCF file.
+
+.. image:: $PATH_TO_IMAGES/complement-glyph.png
+
+@REFERENCES@
+    </help>
+    <expand macro="citations" />
+</tool>