view spacingBed.xml @ 10:c78cf6fe3018 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 44bebb8a97d64015cbba59f0663e2541035112b6

<tool id="bedtools_spacingbed" name="SpacingBed" version="@WRAPPER_VERSION@.0">
    <description>reports the distances between features</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements" />
    <expand macro="stdio" />
    <command>
<![CDATA[
        bedtools spacing
        -i $input
        > $output
]]>
    </command>
    <inputs>
        <param format="bed,vcf,gff,gff3,bam" name="input" type="data" label="BED/VCF/GFF/BAM file"/>
    </inputs>
    <outputs>
        <data format_source="input" name="output" metadata_source="input" label="Spaces between intervals of ${input}"/>
    </outputs>
    <tests>
        <test>
            <param name="input" value="a.bed" ftype="bed" />
            <output name="output" file="spacingBed_result1.bed" ftype="bed" />
        </test>
    </tests>
    <help>
<![CDATA[
**What it does**

Report the spacing between intervals in a file.


@REFERENCES@
]]>
    </help>
    <expand macro="citations" />
</tool>