# HG changeset patch
# User iuc
# Date 1529855558 14400
# Node ID 6283d16e40ed718bbe0986363666f3b497139722
# Parent  a33db97b220ce04d655a8c034ede9483a59d49a9
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bedtools commit 393e1fef41cfb7e28005a98fd5043a3f42347686

diff -r a33db97b220c -r 6283d16e40ed intersectBed.xml
--- a/intersectBed.xml	Tue May 15 14:52:10 2018 -0400
+++ b/intersectBed.xml	Sun Jun 24 11:52:38 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.1">
+<tool id="bedtools_intersectbed" name="Intersect intervals" version="@WRAPPER_VERSION@.2">
     <description>find overlapping intervals in various ways</description>
     <macros>
         <import>macros.xml</import>
@@ -9,6 +9,10 @@
 <![CDATA[
         #set modes = ' '.join( str($overlap_mode).split(',') )
 
+        #if $modes == "None":
+            #set modes = ''
+        #end if
+
         bedtools intersect
             #if $inputA.is_of_type('bam'):
                 -abam '${inputA}'