view test-data/gencode_canonical.hg38.chr6_GL0002508.bed @ 0:e13169dca7c8 draft default tip

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/naltorfs/ commit cbedf7b5968b45a08df88d4ad799951d6f50a2bd"
author iuc
date Mon, 11 Apr 2022 20:36:48 +0000
parents
children
line wrap: on
line source

chr6_GL000250v2_alt	168585	189574	ENST00000437160.6	0	-	169653	189217	12,12,120	8	1664,27,33,116,23,231,96,777,	0,4234,5806,5971,8695,17011,18891,20212,
chr6_GL000250v2_alt	260408	270885	ENST00000426120.2	0	-	260624	269578	12,12,120	7	1802,105,127,92,82,269,253,	0,3949,4702,5171,8728,9161,10224,
chr6_GL000250v2_alt	309837	310865	ENST00000421027.1	0	-	309837	310800	12,12,120	1	1028,	0,
chr6_GL000250v2_alt	351929	352936	ENST00000420178.3	0	-	351929	352871	12,12,120	1	1007,	0,
chr6_GL000250v2_alt	377510	378446	ENST00000428081.1	0	+	377510	378446	12,12,120	1	936,	0,
chr6_GL000250v2_alt	438928	440200	ENST00000440124.4	0	+	439261	440200	12,12,120	1	1272,	0,
chr6_GL000250v2_alt	572355	573321	ENST00000420495.4	0	+	572355	573321	12,12,120	1	966,	0,
chr6_GL000250v2_alt	691168	722731	ENST00000435232.5	0	-	692358	693306	12,12,120	5	2229,48,125,124,85,	0,3408,4796,6359,31478,
chr6_GL000250v2_alt	704969	706618	ENST00000455234.1	0	+	705679	706618	12,12,120	1	1649,	0,
chr6_GL000250v2_alt	722840	729989	ENST00000453467.5	0	+	727430	728381	12,12,120	4	27,116,51,2830,	0,1273,3224,4319,
chr6_GL000250v2_alt	752426	753563	ENST00000418003.3	0	-	752426	753563	12,12,120	1	1137,	0,
chr6_GL000250v2_alt	821306	825621	ENST00000414436.2	0	-	821574	825397	12,12,120	2	739,251,	0,4064,
chr6_GL000250v2_alt	821306	893756	ENST00000449163.5	0	-	869267	893509	12,12,120	19	739,176,144,129,128,94,108,117,133,151,78,64,243,192,66,102,171,135,553,	0,47959,48912,49278,49987,50809,51316,51521,53020,53648,55343,56970,57662,65507,66158,66510,67711,68296,71897,
chr6_GL000250v2_alt	853147	854731	ENST00000453513.4	0	+	853637	854576	12,12,120	1	1584,	0,
chr6_GL000250v2_alt	922689	938078	ENST00000548017.1	0	+	922918	936889	12,12,120	7	317,348,114,21,21,21,1203,	0,2336,9166,10657,10918,13715,14186,
chr6_GL000250v2_alt	938190	938841	ENST00000432222.1	0	-	938207	938841	12,12,120	1	651,	0,
chr6_GL000250v2_alt	1093432	1096751	ENST00000615098.4	0	+	1093456	1095994	12,12,120	7	97,270,276,276,117,33,372,	0,226,722,1597,1995,2557,2947,
chr6_GL000250v2_alt	1147347	1267669	ENST00000640829.1	0	+	1147490	1266858	12,12,120	11	216,16,14,240,276,276,33,84,93,35,281,	0,340,39005,53186,53667,54522,68203,118979,119506,119955,120041,
chr6_GL000250v2_alt	1319351	1323001	ENST00000443494.6	0	+	1319622	1322789	12,12,120	4	416,101,110,237,	0,663,970,3413,
chr6_GL000250v2_alt	1324800	1328425	ENST00000441553.5	0	+	1326768	1327398	12,12,120	3	301,109,1230,	0,1881,2395,
chr6_GL000250v2_alt	1328357	1333979	ENST00000450015.2	0	-	1329202	1333881	12,12,120	4	1426,92,23,665,	0,2891,3190,4957,
chr6_GL000250v2_alt	1368538	1371196	ENST00000422484.1	0	-	1368538	1370895	12,12,120	4	231,96,500,43,	0,1199,1940,2615,
chr6_GL000250v2_alt	1394223	1406831	ENST00000433713.5	0	+	1395132	1405908	12,12,120	6	62,649,96,225,23,1011,	0,605,9866,10857,11392,11597,
chr6_GL000250v2_alt	1410040	1419029	ENST00000449208.6	0	-	1412064	1418953	12,12,120	7	2542,33,116,23,231,96,505,	0,3782,4994,5424,6453,7204,8484,
chr6_GL000250v2_alt	1421285	1430769	ENST00000552062.2	0	+	1421971	1430429	12,12,120	8	860,96,231,9,14,116,33,858,	0,3970,5094,6035,6633,7295,7770,8626,
chr6_GL000250v2_alt	1442505	1471482	ENST00000425523.5	0	-	1443926	1457164	12,12,120	9	2104,33,116,23,231,96,488,104,123,	0,4719,4970,5565,12071,13984,14221,16590,28854,
chr6_GL000250v2_alt	1656333	1673225	ENST00000458607.5	0	+	1658808	1671755	12,12,120	8	152,153,460,96,231,23,116,2018,	0,2046,2468,3938,8907,13070,13667,14874,
chr6_GL000250v2_alt	1658801	1676354	ENST00000550581.3	0	+	1658808	1676306	12,12,120	10	460,96,231,23,116,185,101,83,126,146,	0,1470,6439,10602,11199,12406,15992,16185,17126,17407,
chr6_GL000250v2_alt	1870880	1883062	ENST00000383450.3	0	-	1875575	1883062	12,12,120	7	4937,141,163,179,195,96,208,	0,5319,5735,5975,11091,11708,11974,
chr6_GL000250v2_alt	1988977	2002543	ENST00000450902.6	0	-	1988977	2002347	12,12,120	12	153,99,211,116,111,192,204,255,57,163,239,403,	0,264,560,3155,3439,5329,5599,6007,10938,11318,11564,13163,
chr6_GL000250v2_alt	2005895	2017402	ENST00000438815.2	0	-	2006775	2015525	12,12,120	3	900,211,3488,	0,2790,8019,
chr6_GL000250v2_alt	2017553	2020927	ENST00000427944.5	0	-	2018167	2020481	12,12,120	5	896,177,197,440,45,	0,1229,2000,2795,3329,
chr6_GL000250v2_alt	2029311	2047393	ENST00000427406.6	0	-	2029969	2044679	12,12,120	15	826,111,126,183,120,2478,71,792,93,60,1481,70,381,139,645,	0,2746,2945,3297,3611,3814,7576,7758,11604,11859,12066,13840,13995,15232,17437,
chr6_GL000250v2_alt	2049703	2054929	ENST00000421473.6	0	+	2050009	2053900	12,12,120	4	363,109,111,2087,	0,2336,2717,3139,
chr6_GL000250v2_alt	2057211	2060006	ENST00000420604.1	0	-	2057618	2060006	12,12,120	3	437,165,76,	0,2313,2719,
chr6_GL000250v2_alt	2217891	2218933	ENST00000434428.5	0	+	2218232	2218933	12,12,120	3	426,103,229,	0,519,813,
chr6_GL000250v2_alt	2313217	2319398	ENST00000430305.2	0	+	2313458	2317689	12,12,120	3	302,1445,1904,	0,2514,4277,
chr6_GL000250v2_alt	2827448	2843673	ENST00000619506.1	0	+	2838192	2842459	12,12,120	6	115,255,288,279,132,1342,	0,10718,11244,12123,12501,14883,
chr6_GL000250v2_alt	2861265	2862781	ENST00000424816.2	0	+	2861563	2862484	12,12,120	2	469,486,	0,1030,
chr6_GL000250v2_alt	2862767	2871733	ENST00000448800.5	0	-	2862982	2871733	12,12,120	9	232,148,145,110,132,119,184,93,38,	0,560,834,1077,2561,5148,6281,8544,8928,
chr6_GL000250v2_alt	2909112	2910915	ENST00000445232.2	0	+	2909112	2910116	12,12,120	3	46,48,1221,	0,233,582,
chr6_GL000250v2_alt	2913133	2915004	ENST00000457552.2	0	-	2913287	2914996	12,12,120	4	609,72,46,170,	0,1004,1259,1701,
chr6_GL000250v2_alt	2918702	2921488	ENST00000433676.6	0	+	2919878	2921255	12,12,120	4	192,119,23,392,	0,1076,1820,2394,
chr6_GL000250v2_alt	2921473	2925564	ENST00000432392.6	0	-	2921772	2925300	12,12,120	4	337,108,345,307,	0,631,887,3784,
chr6_GL000250v2_alt	3089203	3095288	ENST00000430216.5	0	+	3090740	3095143	12,12,120	14	325,872,73,110,81,88,190,127,150,75,144,138,74,257,	0,830,1956,2174,2505,2833,3194,3498,4098,4596,4880,5226,5520,5828,
chr6_GL000250v2_alt	3095410	3097463	ENST00000436320.5	0	+	3095666	3097143	12,12,120	4	370,141,96,413,	0,616,1265,1640,
chr6_GL000250v2_alt	3098201	3109905	ENST00000452329.2	0	-	3098205	3109390	12,12,120	17	181,175,140,302,93,153,133,186,117,113,170,196,111,97,279,249,186,	0,293,655,873,1568,1772,2032,3427,4084,4410,7363,7651,8925,9742,10373,10955,11518,
chr6_GL000250v2_alt	3130006	3139596	ENST00000432122.2	0	-	3130367	3139369	12,12,120	5	487,60,31,68,230,	0,594,1081,8680,9360,
chr6_GL000250v2_alt	3142240	3147687	ENST00000426095.2	0	-	3142668	3144594	12,12,120	2	2367,177,	0,5270,
chr6_GL000250v2_alt	3148164	3150568	ENST00000422919.1	0	+	3148378	3150304	12,12,120	2	289,1620,	0,784,
chr6_GL000250v2_alt	3160359	3162874	ENST00000450744.1	0	+	3160575	3162501	12,12,120	1	2515,	0,
chr6_GL000250v2_alt	3167532	3172376	ENST00000430690.5	0	+	3169944	3172278	12,12,120	5	283,41,219,200,219,	0,492,1382,2319,4625,
chr6_GL000250v2_alt	3191667	3195522	ENST00000423382.2	0	-	3192334	3195392	12,12,120	6	894,223,183,263,193,289,	0,990,1387,2136,2947,3566,
chr6_GL000250v2_alt	3195810	3211661	ENST00000550401.2	0	-	3196242	3211595	12,12,120	20	554,85,95,71,74,104,95,254,103,93,100,236,84,88,61,100,79,74,49,106,	0,1457,1621,1815,2120,2303,2495,2678,5960,6350,7406,7615,8117,8277,11264,11733,12656,12860,13838,15745,
chr6_GL000250v2_alt	3212373	3230306	ENST00000421926.6	0	-	3212698	3230299	12,12,120	28	506,176,79,87,116,78,145,168,155,105,102,123,107,83,183,236,144,149,102,115,135,156,41,85,254,219,67,49,	0,914,1255,2940,3135,3603,4047,4633,4886,5153,6822,7016,7236,7818,8020,8282,8604,8840,9210,9469,9709,12652,12939,13071,16511,16854,17171,17884,
chr6_GL000250v2_alt	3406267	3418718	ENST00000433037.1	0	-	3406267	3418718	12,12,120	6	306,333,306,291,297,369,	0,5366,7700,8368,10745,12082,
chr6_GL000250v2_alt	3480956	3485682	ENST00000445122.5	0	-	3481819	3484701	12,12,120	6	1040,186,216,91,81,112,	0,1178,2009,3450,3737,4614,
chr6_GL000250v2_alt	3497183	3500883	ENST00000414111.6	0	+	3498767	3500558	12,12,120	9	75,129,123,110,96,171,80,154,372,	0,1556,1916,2119,2328,2505,2768,2921,3328,
chr6_GL000250v2_alt	3500813	3510698	ENST00000430777.2	0	-	3501877	3504098	12,12,120	7	1237,73,96,176,134,209,96,	0,1754,1953,2213,2725,3085,9789,
chr6_GL000250v2_alt	3510955	3513395	ENST00000449794.2	0	+	3511113	3512928	12,12,120	6	298,19,113,55,118,565,	0,1187,1297,1523,1655,1875,
chr6_GL000250v2_alt	3513569	3516924	ENST00000549839.5	0	-	3513744	3516824	12,12,120	5	272,83,123,107,152,	0,383,2660,2913,3203,
chr6_GL000250v2_alt	3517334	3522785	ENST00000453487.2	0	-	3518980	3522514	12,12,120	9	1739,87,89,154,136,191,248,74,492,	0,1868,2077,2506,2911,3230,3521,3987,4959,
chr6_GL000250v2_alt	3523364	3528122	ENST00000457070.1	0	-	3523964	3525112	12,12,120	8	738,200,103,59,84,81,93,98,	0,943,1382,1706,2275,3544,3971,4660,
chr6_GL000250v2_alt	3527441	3536999	ENST00000425600.1	0	-	3528035	3536999	12,12,120	12	1308,98,148,296,139,82,220,176,384,524,113,253,	0,1481,2082,2456,3579,3807,4084,6000,6286,7245,8938,9305,
chr6_GL000250v2_alt	3655068	3704125	ENST00000425722.1	0	-	3655068	3703952	12,12,120	19	21,21,24,21,21,21,21,21,21,39,90,21,21,21,30,33,33,87,186,	0,637,1109,8114,9561,12963,13438,14141,16499,17121,26913,32289,32814,43342,43448,45110,45965,47083,48871,
chr6_GL000250v2_alt	3726193	3739359	ENST00000445928.5	0	-	3726199	3739352	12,12,120	7	95,282,348,21,282,348,86,	0,781,2076,7820,8970,10974,13080,
chr6_GL000250v2_alt	3823888	3837634	ENST00000426847.2	0	-	3824827	3837535	12,12,120	6	953,24,111,282,270,199,	0,1752,2249,3043,5625,13547,
chr6_GL000250v2_alt	4047519	4053351	ENST00000449560.5	0	+	4047581	4052533	12,12,120	4	144,249,282,973,	0,3778,4410,4859,
chr6_GL000250v2_alt	4062236	4069674	ENST00000419685.6	0	-	4062591	4069610	12,12,120	6	369,24,111,282,267,161,	0,1184,1676,2753,5563,7277,
chr6_GL000250v2_alt	4117786	4122072	ENST00000426644.6	0	-	4118239	4121975	12,12,120	6	489,32,111,282,270,188,	0,677,960,1557,2281,4098,
chr6_GL000250v2_alt	4126846	4143590	ENST00000439425.6	0	-	4127302	4143099	12,12,120	12	486,137,160,174,189,129,198,206,131,115,497,75,	0,7419,7949,8286,8637,10352,10646,13173,13662,15556,15760,16669,
chr6_GL000250v2_alt	4145581	4149568	ENST00000436627.2	0	-	4145823	4149278	12,12,120	6	331,205,130,112,148,425,	0,814,1417,1955,2225,3562,
chr6_GL000250v2_alt	4150073	4158843	ENST00000418205.2	0	-	4150443	4158681	12,12,120	11	577,137,163,174,189,129,198,206,131,115,940,	0,1859,2304,2710,3443,3781,5109,5733,6900,7179,7830,
chr6_GL000250v2_alt	4159070	4184429	ENST00000425855.2	0	+	4159094	4184317	12,12,120	6	84,68,130,142,93,156,	0,1932,3799,4158,22841,25203,
chr6_GL000250v2_alt	4239473	4245915	ENST00000395312.7	0	-	4239815	4245652	12,12,120	6	359,36,117,285,282,318,	0,713,907,2543,4055,6124,
chr6_GL000250v2_alt	4369248	4385378	ENST00000443117.5	0	-	4373329	4378232	12,12,120	6	779,167,282,246,199,31,	0,4069,4450,5072,8884,16099,
chr6_GL000250v2_alt	4380587	4391853	ENST00000411749.6	0	+	4380703	4390890	12,12,120	6	216,264,282,111,24,663,	0,4752,9014,9843,10283,10603,