annotate test-data/test_gtdb_file.tsv @ 1:d368e312aebd draft

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date Fri, 30 Aug 2024 14:39:04 +0000
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1 user_genome classification fastani_reference fastani_reference_radius fastani_taxonomy fastani_ani fastani_af closest_placement_reference closest_placement_radius closest_placement_taxonomy closest_placement_ani closest_placement_af pplacer_taxonomy classification_method note other_related_references(genome_id,species_name,radius,ANI,AF) msa_percent translation_table red_value warnings
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2 1 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A;s__Williamsia_A herbipolensis GCF_000964005.1 95.0 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A;s__Williamsia_A herbipolensis 95.01 0.891 GCF_000964005.1 95.0 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A;s__Williamsia_A herbipolensis 95.01 0.891 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Williamsia_A;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_014635305.1, s__Williamsia_A phyllosphaerae, 95.0, 82.43, 0.702; GCA_016462415.1, s__Williamsia_A sp016462415, 95.0, 82.15, 0.649; GCF_018474015.1, s__Williamsia_A sp018474015, 95.0, 80.23, 0.523 96.49 11 N/A N/A
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3 10 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xylella;s__Xylella fastidiosa GCF_011801475.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xylella;s__Xylella fastidiosa 99.99 1.0 GCF_011801475.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xylella;s__Xylella fastidiosa 99.99 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Xylella;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_013177435.1, s__Xylella taiwanensis, 95.0, 82.85, 0.849 85.13 11 N/A N/A
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4 11 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Caminicellaceae;g__Paramaledivibacter;s__Paramaledivibacter caminithermalis GCF_900142245.1 95.0 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Caminicellaceae;g__Paramaledivibacter;s__Paramaledivibacter caminithermalis 99.97 0.872 GCF_900142245.1 95.0 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Caminicellaceae;g__Paramaledivibacter;s__Paramaledivibacter caminithermalis 99.97 0.872 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Caminicellaceae;g__;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments N/A 78.49 11 N/A Genome has more than 10.0% of markers with multiple hits
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5 12 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__Flavisolibacter ginsengisoli GCF_900129295.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__Flavisolibacter ginsengisoli 100.0 0.999 GCF_900129295.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__Flavisolibacter ginsengisoli 100.0 0.999 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_017745135.1, s__Flavisolibacter sp017745135, 95.0, 77.32, 0.1; GCA_013327885.1, s__Flavisolibacter sp013327885, 95.0, 77.25, 0.081; GCF_007970805.1, s__Flavisolibacter ginsenosidimutans, 95.0, 76.92, 0.056; GCF_003628535.1, s__Flavisolibacter nicotianae, 95.0, 76.88, 0.08; GCA_014163555.1, s__Flavisolibacter sp014163555, 95.0, 76.86, 0.077; GCA_002050435.1, s__Flavisolibacter sp002050435, 95.0, 76.62, 0.139 97.8 11 N/A N/A
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6 13 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 97.96 0.859 GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 97.96 0.859 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_017388605.1, s__Anaeroplasma sp017388605, 95.0, 83.32, 0.715; GCA_016280975.1, s__Anaeroplasma sp016280975, 95.0, 78.46, 0.241; GCA_017449215.1, s__Anaeroplasma sp017449215, 95.0, 77.98, 0.251; GCA_002449755.1, s__Anaeroplasma sp002449755, 95.0, 77.78, 0.249; GCA_017441525.1, s__Anaeroplasma sp017441525, 95.0, 77.67, 0.269; GCA_016282815.1, s__Anaeroplasma sp016282815, 95.0, 77.61, 0.204; GCA_017524905.1, s__Anaeroplasma sp017524905, 95.0, 77.59, 0.242; GCA_900770055.1, s__Anaeroplasma sp900770055, 95.0, 77.45, 0.176; GCA_015059145.1, s__Anaeroplasma sp015059145, 95.0, 77.44, 0.194; GCA_017542485.1, s__Anaeroplasma sp017542485, 95.0, 77.44, 0.199; GCA_017462645.1, s__Anaeroplasma sp017462645, 95.0, 77.4, 0.236; GCA_016288855.1, s__Anaeroplasma sp016288855, 95.0, 77.33, 0.203; GCA_017444645.1, s__Anaeroplasma sp017444645, 95.0, 77.24, 0.231; GCA_017454375.1, s__Anaeroplasma sp017454375, 95.0, 77.07, 0.14; GCA_902783745.1, s__Anaeroplasma sp902783745, 95.0, 77.01, 0.214; GCA_018715825.1, s__Anaeroplasma faecigallinarum, 95.0, 76.96, 0.115; GCA_900767915.1, s__Anaeroplasma sp900767915, 95.0, 76.92, 0.173; GCA_902796895.1, s__Anaeroplasma sp902796895, 95.0, 76.82, 0.227; GCA_905236105.1, s__Anaeroplasma sp905236105, 95.0, 76.14, 0.118; GCA_905236965.1, s__Anaeroplasma sp905236965, 95.0, 75.89, 0.176 55.08 11 N/A Genome has more than 19.2% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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7 14 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425045 GCF_001425045.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425045 100.0 1.0 GCF_001425045.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425045 100.0 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_001425265.1, s__Pseudoduganella sp001425265, 95.0, 92.95, 0.957; GCF_003053665.1, s__Pseudoduganella sp003053665, 95.0, 91.93, 0.891; GCF_009857595.1, s__Pseudoduganella aquatica_A, 95.0, 91.22, 0.978; GCF_900116645.1, s__Pseudoduganella namucuonensis, 95.0, 87.85, 0.913; GCF_014191875.1, s__Pseudoduganella violacea, 95.0, 84.06, 0.761; GCF_013369485.1, s__Pseudoduganella sp013369485, 95.0, 84.01, 0.804; GCF_009674485.1, s__Pseudoduganella sp009674485, 95.0, 83.86, 0.804; GCF_000425385.1, s__Pseudoduganella violaceinigra, 95.0, 83.6, 0.804; GCF_001191005.1, s__Pseudoduganella sp001191005, 95.0, 83.48, 0.848; GCF_004421005.1, s__Pseudoduganella plicata, 95.0, 83.23, 0.717; GCF_003028855.1, s__Pseudoduganella armeniaca, 95.0, 83.18, 0.804; GCA_008011715.1, s__Pseudoduganella haloabium, 95.0, 83.0, 0.848; GCF_007830455.1, s__Pseudoduganella lurida, 95.0, 82.99, 0.761; GCF_009720865.1, s__Pseudoduganella ginsengisoli, 95.0, 82.96, 0.848; GCF_001427305.1, s__Pseudoduganella sp001427305, 95.0, 82.81, 0.761; GCF_004322755.1, s__Pseudoduganella albidiflava, 95.0, 82.76, 0.826; GCF_009720835.1, s__Pseudoduganella buxea, 95.0, 82.6, 0.804; GCF_009857475.1, s__Pseudoduganella guangdongensis, 95.0, 82.56, 0.783; GCF_004217275.1, s__Pseudoduganella sp004217275, 95.0, 82.55, 0.761; GCF_900113115.1, s__Pseudoduganella sp900113115, 95.0, 82.37, 0.739; GCA_002454505.1, s__Pseudoduganella sp002454505, 95.0, 82.35, 0.783; GCF_009727155.1, s__Pseudoduganella dura, 95.0, 82.31, 0.848; GCF_014192225.1, s__Pseudoduganella umbonata, 95.0, 82.27, 0.826; GCF_001425005.1, s__Pseudoduganella sp001425005, 95.0, 82.22, 0.783; GCF_004209755.1, s__Pseudoduganella lutea, 95.0, 82.18, 0.826; GCF_007830495.1, s__Pseudoduganella flava, 95.0, 82.17, 0.804; GCF_009720745.1, s__Pseudoduganella eburnea, 95.0, 81.81, 0.848 12.39 11 N/A N/A
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8 15 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albidovulum;s__Albidovulum denitrificans GCF_002973535.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albidovulum;s__Albidovulum denitrificans 100.0 0.998 GCF_002973535.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albidovulum;s__Albidovulum denitrificans 100.0 0.998 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Albidovulum;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_002440625.1, s__Albidovulum sp002440625, 95.0, 81.59, 0.611; GCA_002280515.1, s__Albidovulum sp002280515, 95.0, 81.47, 0.618; GCA_011620265.1, s__Albidovulum sp011620265, 95.0, 81.18, 0.602; GCA_008933605.1, s__Albidovulum sp008933605, 95.0, 80.63, 0.571; GCA_002841115.1, s__Albidovulum sp002841115, 95.0, 80.51, 0.565; GCF_900302475.1, s__Albidovulum aquaemixtae, 95.0, 79.33, 0.459; GCF_002927635.1, s__Albidovulum inexpectatum, 95.0, 79.06, 0.482 89.91 11 N/A N/A
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9 16 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 98.99 0.916 GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 98.99 0.916 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_017388605.1, s__Anaeroplasma sp017388605, 95.0, 83.71, 0.719; GCA_017449215.1, s__Anaeroplasma sp017449215, 95.0, 78.26, 0.268; GCA_017441525.1, s__Anaeroplasma sp017441525, 95.0, 78.17, 0.276; GCA_017524905.1, s__Anaeroplasma sp017524905, 95.0, 77.95, 0.238; GCA_002449755.1, s__Anaeroplasma sp002449755, 95.0, 77.9, 0.268; GCA_016280975.1, s__Anaeroplasma sp016280975, 95.0, 77.81, 0.257; GCA_017462645.1, s__Anaeroplasma sp017462645, 95.0, 77.8, 0.236; GCA_017542485.1, s__Anaeroplasma sp017542485, 95.0, 77.55, 0.195; GCA_017444645.1, s__Anaeroplasma sp017444645, 95.0, 77.47, 0.262; GCA_900770055.1, s__Anaeroplasma sp900770055, 95.0, 77.41, 0.184; GCA_902783745.1, s__Anaeroplasma sp902783745, 95.0, 77.4, 0.217; GCA_016288855.1, s__Anaeroplasma sp016288855, 95.0, 77.38, 0.218; GCA_016282815.1, s__Anaeroplasma sp016282815, 95.0, 77.33, 0.221; GCA_015059145.1, s__Anaeroplasma sp015059145, 95.0, 77.32, 0.197; GCA_017454375.1, s__Anaeroplasma sp017454375, 95.0, 77.22, 0.13; GCA_900767915.1, s__Anaeroplasma sp900767915, 95.0, 77.2, 0.183; GCA_018715825.1, s__Anaeroplasma faecigallinarum, 95.0, 76.96, 0.111; GCA_902796895.1, s__Anaeroplasma sp902796895, 95.0, 76.93, 0.242; GCA_905236965.1, s__Anaeroplasma sp905236965, 95.0, 76.16, 0.185; GCA_905236105.1, s__Anaeroplasma sp905236105, 95.0, 76.08, 0.131 50.77 11 N/A Genome has more than 15.8% of markers with multiple hits
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10 17 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Tepidibacter;s__Tepidibacter formicigenes GCF_900142235.1 95.0 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Tepidibacter;s__Tepidibacter formicigenes 100.0 0.999 GCF_900142235.1 95.0 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Tepidibacter;s__Tepidibacter formicigenes 100.0 0.999 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Tepidibacter;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_900129915.1, s__Tepidibacter thalassicus, 95.0, 86.9, 0.78 77.03 11 N/A N/A
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11 18 d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Thermosporothrix;s__Thermosporothrix hazakensis GCF_003253565.1 95.0 d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Thermosporothrix;s__Thermosporothrix hazakensis 100.0 0.999 GCF_003253565.1 95.0 d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__Thermosporothrix;s__Thermosporothrix hazakensis 100.0 0.999 d__Bacteria;p__Chloroflexota;c__Ktedonobacteria;o__Ktedonobacterales;f__Ktedonobacteraceae;g__;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments N/A 84.41 11 N/A Genome has more than 11.7% of markers with multiple hits
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12 19 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 99.76 0.989 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 99.76 0.989 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_000702605.1, s__Exiguobacterium_A acetylicum, 95.0, 90.87, 0.853; GCF_001939065.1, s__Exiguobacterium_A indicum, 95.0, 90.72, 0.833; GCF_001275385.1, s__Exiguobacterium_A sp001275385, 95.0, 89.22, 0.814; GCF_018618755.1, s__Exiguobacterium_A sp018618755, 95.0, 80.92, 0.543; GCF_000702625.1, s__Exiguobacterium_A oxidotolerans, 95.0, 80.85, 0.548; GCF_000019905.1, s__Exiguobacterium_A sibiricum, 95.0, 80.84, 0.552; GCF_000620865.1, s__Exiguobacterium_A sibiricum_A, 95.0, 80.82, 0.534; GCA_902363455.1, s__Exiguobacterium_A sp902363455, 95.0, 80.8, 0.51; GCF_003339585.1, s__Exiguobacterium_A sp003339585, 95.0, 80.75, 0.542; GCF_000620805.1, s__Exiguobacterium_A undae, 95.0, 80.72, 0.516; GCF_000685865.1, s__Exiguobacterium_A antarcticum, 95.0, 80.66, 0.512; GCF_014524545.1, s__Exiguobacterium_A sp004339505, 95.0, 80.64, 0.522; GCF_001870785.1, s__Exiguobacterium_A sp001870785, 95.0, 80.58, 0.531; GCF_003344535.1, s__Exiguobacterium_A flavidum, 95.0, 79.37, 0.3 16.18 11 N/A Genome has more than 82.5% of markers with multiple hits
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13 2 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 99.23 0.971 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 99.23 0.971 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_000702605.1, s__Exiguobacterium_A acetylicum, 95.0, 90.41, 0.883; GCF_001939065.1, s__Exiguobacterium_A indicum, 95.0, 90.37, 0.852; GCF_001275385.1, s__Exiguobacterium_A sp001275385, 95.0, 88.8, 0.834; GCF_018618755.1, s__Exiguobacterium_A sp018618755, 95.0, 80.82, 0.518; GCA_902363455.1, s__Exiguobacterium_A sp902363455, 95.0, 80.82, 0.478; GCF_000702625.1, s__Exiguobacterium_A oxidotolerans, 95.0, 80.81, 0.511; GCF_000620865.1, s__Exiguobacterium_A sibiricum_A, 95.0, 80.77, 0.523; GCF_000620805.1, s__Exiguobacterium_A undae, 95.0, 80.74, 0.5; GCF_003339585.1, s__Exiguobacterium_A sp003339585, 95.0, 80.63, 0.504; GCF_000019905.1, s__Exiguobacterium_A sibiricum, 95.0, 80.61, 0.502; GCF_000685865.1, s__Exiguobacterium_A antarcticum, 95.0, 80.57, 0.501; GCF_014524545.1, s__Exiguobacterium_A sp004339505, 95.0, 80.55, 0.514; GCF_001870785.1, s__Exiguobacterium_A sp001870785, 95.0, 80.52, 0.514; GCF_003344535.1, s__Exiguobacterium_A flavidum, 95.0, 79.14, 0.277 86.16 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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14 20 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chitinibacteraceae;g__Andreprevotia;s__Andreprevotia lacus GCF_900176275.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chitinibacteraceae;g__Andreprevotia;s__Andreprevotia lacus 100.0 1.0 GCF_900176275.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chitinibacteraceae;g__Andreprevotia;s__Andreprevotia lacus 100.0 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Chitinibacteraceae;g__Andreprevotia;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_009848685.1, s__Andreprevotia sp009848685, 95.0, 82.66, 0.616; GCF_000711875.1, s__Andreprevotia chitinilytica, 95.0, 80.35, 0.45 92.83 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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15 21 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425045 GCF_001425045.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425045 100.0 1.0 GCF_001425045.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425045 100.0 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_001425265.1, s__Pseudoduganella sp001425265, 95.0, 90.09, 0.928; GCF_003053665.1, s__Pseudoduganella sp003053665, 95.0, 89.99, 0.888; GCF_009857595.1, s__Pseudoduganella aquatica_A, 95.0, 88.9, 0.843; GCF_900116645.1, s__Pseudoduganella namucuonensis, 95.0, 85.3, 0.781; GCF_014191875.1, s__Pseudoduganella violacea, 95.0, 82.17, 0.604; GCF_001191005.1, s__Pseudoduganella sp001191005, 95.0, 82.07, 0.612; GCF_013369485.1, s__Pseudoduganella sp013369485, 95.0, 82.03, 0.605; GCA_008011715.1, s__Pseudoduganella haloabium, 95.0, 81.49, 0.621; GCF_009674485.1, s__Pseudoduganella sp009674485, 95.0, 81.47, 0.689; GCF_009720835.1, s__Pseudoduganella buxea, 95.0, 81.41, 0.6; GCF_009857475.1, s__Pseudoduganella guangdongensis, 95.0, 81.4, 0.581; GCF_003028855.1, s__Pseudoduganella armeniaca, 95.0, 81.39, 0.619; GCF_000425385.1, s__Pseudoduganella violaceinigra, 95.0, 81.23, 0.526; GCF_007830455.1, s__Pseudoduganella lurida, 95.0, 81.11, 0.574; GCF_900113115.1, s__Pseudoduganella sp900113115, 95.0, 81.1, 0.541; GCF_004217275.1, s__Pseudoduganella sp004217275, 95.0, 81.1, 0.555; GCF_009720745.1, s__Pseudoduganella eburnea, 95.0, 81.0, 0.551; GCA_002454505.1, s__Pseudoduganella sp002454505, 95.0, 81.0, 0.579; GCF_001425005.1, s__Pseudoduganella sp001425005, 95.0, 80.95, 0.557; GCF_014192225.1, s__Pseudoduganella umbonata, 95.0, 80.88, 0.602; GCF_009727155.1, s__Pseudoduganella dura, 95.0, 80.84, 0.597; GCF_004322755.1, s__Pseudoduganella albidiflava, 95.0, 80.82, 0.628; GCF_001427305.1, s__Pseudoduganella sp001427305, 95.0, 80.8, 0.562; GCF_004421005.1, s__Pseudoduganella plicata, 95.0, 80.7, 0.553; GCF_004209755.1, s__Pseudoduganella lutea, 95.0, 80.57, 0.569; GCF_007830495.1, s__Pseudoduganella flava, 95.0, 80.5, 0.617; GCF_009720865.1, s__Pseudoduganella ginsengisoli, 95.0, 80.45, 0.545 43.37 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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16 22 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Nonlabens;s__Nonlabens dokdonensis GCF_000332115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Nonlabens;s__Nonlabens dokdonensis 100.0 1.0 GCF_000332115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Nonlabens;s__Nonlabens dokdonensis 100.0 1.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Nonlabens;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_002162835.1, s__Nonlabens dokdonensis_B, 95.0, 86.47, 0.762; GCF_000732625.1, s__Nonlabens ulvanivorans, 95.0, 79.63, 0.287; GCF_002934445.1, s__Nonlabens xylanidelens, 95.0, 79.33, 0.543; GCF_002831625.1, s__Nonlabens sp002831625, 95.0, 79.02, 0.461; GCF_012974865.1, s__Nonlabens sp012974865, 95.0, 78.76, 0.472; GCA_000153385.1, s__Nonlabens sp000153385, 95.0, 78.67, 0.259; GCF_000755285.1, s__Nonlabens ulvanivorans_A, 95.0, 78.48, 0.316; GCF_002954765.1, s__Nonlabens arenilitoris, 95.0, 78.4, 0.305; GCA_018401815.1, s__Nonlabens sp018401815, 95.0, 78.16, 0.397; GCF_003966335.1, s__Nonlabens ponticola, 95.0, 77.67, 0.152; GCF_900101765.1, s__Nonlabens sp900101765, 95.0, 77.65, 0.156; GCF_000831385.1, s__Nonlabens marinus, 95.0, 77.49, 0.16; GCF_002994045.1, s__Nonlabens agnitus, 95.0, 77.34, 0.184; GCF_001413925.1, s__Nonlabens sp001413925, 95.0, 76.88, 0.17; GCF_002954355.1, s__Nonlabens tegetincola, 95.0, 76.75, 0.152; GCF_002117125.1, s__Nonlabens spongiae, 95.0, 76.63, 0.121; GCF_003865345.1, s__Nonlabens xiamenensis, 95.0, 76.61, 0.138; GCF_015356755.1, s__Nonlabens antarcticus, 95.0, 76.38, 0.163 47.56 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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17 23 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa GCF_001457615.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa 100.0 1.0 GCF_001457615.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__Pseudomonas aeruginosa 100.0 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_000017205.1, s__Pseudomonas aeruginosa_A, 95.0, 94.08, 0.898; GCF_900187975.1, s__Pseudomonas delhiensis, 95.078, 84.72, 0.657; GCF_900103845.1, s__Pseudomonas jinjuensis, 95.0, 84.68, 0.586; GCF_900112375.1, s__Pseudomonas citronellolis, 95.078, 84.65, 0.657; GCF_017589465.1, s__Pseudomonas sp017589465, 95.0, 84.16, 0.606; GCF_000349845.1, s__Pseudomonas sp000349845, 95.0, 83.98, 0.654; GCF_017491605.1, s__Pseudomonas sp017491605, 95.0, 83.93, 0.609; GCF_014204515.1, s__Pseudomonas nitritireducens_A, 95.0, 83.89, 0.64; GCA_002452115.1, s__Pseudomonas nitroreducens_B, 95.0, 83.87, 0.623; GCF_000689415.1, s__Pseudomonas knackmussii, 95.0, 83.83, 0.579; GCF_900099785.1, s__Pseudomonas panipatensis, 95.0, 83.79, 0.609; GCF_000955805.1, s__Pseudomonas sp000955805, 95.0, 83.72, 0.626; GCF_008807415.1, s__Pseudomonas sp002079985, 95.0, 83.68, 0.631; GCF_009189165.1, s__Pseudomonas sp009189165, 95.0, 83.63, 0.584; GCF_002091755.1, s__Pseudomonas nitroreducens, 95.0, 83.55, 0.618; GCA_002796985.1, s__Pseudomonas sp002796985, 95.0, 83.47, 0.604; GCF_014852585.1, s__Pseudomonas sp014852585, 95.0, 83.39, 0.608; GCF_000313755.1, s__Pseudomonas nitroreducens_A, 95.0, 83.37, 0.611; GCF_016919445.1, s__Pseudomonas sp016919445, 95.0, 83.35, 0.614; GCF_005877905.1, s__Pseudomonas nicosulfuronedens, 95.0, 83.35, 0.613 90.35 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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18 24 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus denitrificans GCF_900100045.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus denitrificans 100.0 0.85 GCF_900100045.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus denitrificans 100.0 0.85 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_001447385.1, s__Paracoccus sp001447385, 95.0, 91.66, 0.582; GCF_008824185.1, s__Paracoccus pantotrophus, 95.0, 91.28, 0.634; GCF_000518925.1, s__Paracoccus sp000518925, 95.0, 90.94, 0.62; GCF_000763885.1, s__Paracoccus versutus, 95.0, 90.85, 0.57; GCF_016446475.1, s__Paracoccus binzhouensis, 95.0, 88.9, 0.547; GCF_900156255.1, s__Paracoccus thiocyanatus, 95.0, 88.81, 0.661; GCF_016919705.1, s__Paracoccus sp002359815, 95.0, 87.13, 0.614; GCF_001546115.1, s__Paracoccus aminovorans_B, 95.0, 86.89, 0.534; GCF_900005615.1, s__Paracoccus aminovorans, 95.0, 86.71, 0.557; GCF_000622145.1, s__Paracoccus yeei, 96.0533, 84.29, 0.492; GCF_009301415.1, s__Paracoccus kondratievae, 95.0, 84.29, 0.567; GCF_003285265.1, s__Paracoccus mutanolyticus, 96.0533, 84.23, 0.54; GCF_003337565.1, s__Paracoccus lutimaris, 95.0, 84.16, 0.5; GCF_000763905.1, s__Paracoccus halophilus, 95.0, 84.01, 0.499; GCA_018056045.1, s__Paracoccus sp018056045, 95.0, 83.99, 0.546; GCF_009711185.1, s__Paracoccus limosus, 95.0, 83.56, 0.528; GCF_009696685.1, s__Paracoccus sp009696685, 95.0, 83.34, 0.592; GCF_003709565.1, s__Paracoccus siganidrum, 95.0, 83.3, 0.476; GCF_009711205.1, s__Paracoccus litorisediminis, 95.0, 82.54, 0.387; GCF_009711265.1, s__Paracoccus sp009711265, 95.0, 82.45, 0.476; GCF_004522175.1, s__Paracoccus ravus, 95.0, 82.05, 0.419; GCF_900142875.1, s__Paracoccus solventivorans, 95.0, 81.92, 0.487; GCF_018860165.1, s__Paracoccus sp018860165, 95.0, 81.79, 0.441; GCF_007830335.1, s__Paracoccus sulfuroxidans, 95.0, 81.77, 0.452; GCF_900182695.1, s__Paracoccus laeviglucosivorans, 95.0, 81.62, 0.457; GCF_900631945.1, s__Paracoccus haematequi, 95.0, 81.4, 0.457; GCF_017356265.1, s__Paracoccus fontiphilus, 95.0, 81.21, 0.448; GCF_000763805.1, s__Paracoccus sphaerophysae, 95.0, 81.21, 0.486; GCF_017315735.1, s__Paracoccus sp017315735, 95.0, 81.15, 0.457; GCF_900110285.1, s__Paracoccus alcaliphilus, 95.0, 81.14, 0.422; GCF_009711225.1, s__Paracoccus aestuariivivens, 95.0, 81.1, 0.383; GCF_900108405.1, s__Paracoccus alkenifer, 95.0, 81.07, 0.499; GCF_009708075.1, s__Paracoccus lichenicola, 95.0, 81.07, 0.444; GCF_014642735.1, s__Paracoccus acridae, 95.0, 80.96, 0.429; GCF_003594815.1, s__Paracoccus aestuarii, 95.0, 80.95, 0.461; GCF_002287065.1, s__Paracoccus salipaludis, 95.0, 80.84, 0.451; GCF_900102885.1, s__Paracoccus chinensis, 95.0, 80.73, 0.442; GCF_004683865.2, s__Paracoccus liaowanqingii, 95.0, 80.72, 0.332; GCF_014656455.1, s__Paracoccus aerius, 95.0, 80.7, 0.405; GCF_002847445.1, s__Paracoccus zhejiangensis, 95.0, 80.7, 0.402; GCF_005048225.1, s__Paracoccus gahaiensis, 95.0, 80.69, 0.401; GCF_019061185.1, s__Paracoccus sp019061185, 95.0, 80.68, 0.461; GCF_004522155.1, s__Paracoccus luteus, 95.0, 80.66, 0.494; GCF_016617715.1, s__Paracoccus sp014164625, 95.0, 80.62, 0.431; GCF_003286075.1, s__Paracoccus endophyticus, 95.0, 80.58, 0.488; GCF_900106665.1, s__Paracoccus sanguinis, 95.0, 80.52, 0.462; GCF_000420145.1, s__Paracoccus zeaxanthinifaciens, 95.0, 80.43, 0.469; GCF_900102505.1, s__Paracoccus tibetensis, 95.0, 80.39, 0.408; GCF_006151785.1, s__Paracoccus marcusii, 95.0, 80.38, 0.404; GCF_900188295.1, s__Paracoccus sediminis, 95.0, 80.37, 0.423; GCF_003007735.2, s__Paracoccus marinus_A, 95.0, 80.34, 0.35; GCF_005048265.1, s__Paracoccus hibiscisoli, 95.0, 80.26, 0.425; GCF_002865605.1, s__Paracoccus jeotgali, 95.0, 80.23, 0.449; GCA_002294185.1, s__Paracoccus sp002294185, 95.0, 80.16, 0.432; GCF_013868135.1, s__Paracoccus sp013868135, 95.0, 80.14, 0.412; GCF_002105555.1, s__Paracoccus contaminans, 95.0, 80.12, 0.474; GCF_000444995.1, s__Paracoccus aminophilus, 95.0, 80.1, 0.334; GCF_004310345.1, s__Paracoccus subflavus, 95.0, 80.08, 0.465; GCF_004923205.2, s__Paracoccus aeridis, 95.0, 80.04, 0.421; GCF_000787695.1, s__Paracoccus sp000787695, 95.0, 80.03, 0.366; GCF_007096355.1, s__Paracoccus sp007096355, 95.0, 79.99, 0.371; GCF_007018965.1, s__Paracoccus marinus, 95.0, 79.94, 0.448; GCF_011308835.1, s__Paracoccus xiamenensis, 95.0, 79.84, 0.416; GCF_016629665.1, s__Paracoccus caeni, 95.0, 79.83, 0.368; GCF_018860625.1, s__Paracoccus sp018860625, 95.0, 79.83, 0.403; GCA_003255745.1, s__Paracoccus saliphilus_A, 95.0, 79.82, 0.388; GCF_003697785.1, s__Paracoccus alkanivorans, 95.0, 79.77, 0.339; GCF_003056335.1, s__Paracoccus indicus, 95.0, 79.77, 0.412; GCF_009674885.1, s__Paracoccus sp009674885, 95.0, 79.76, 0.378; GCF_017744015.1, s__Paracoccus sp002732665, 95.0, 79.74, 0.365; GCF_003259195.1, s__Paracoccus sediminilitoris, 95.0, 79.7, 0.398; GCA_900156835.1, s__Paracoccus saliphilus, 95.0, 79.65, 0.301; GCF_900101865.1, s__Paracoccus isoporae, 95.0, 79.64, 0.403; GCF_900111675.1, s__Paracoccus homiensis, 95.0, 79.63, 0.369; GCA_016869875.1, s__Paracoccus sp016869875, 95.0, 79.53, 0.311; GCF_004335005.1, s__Paracoccus sp004335005, 95.0, 79.5, 0.361; GCF_003324675.1, s__Paracoccus suum, 95.0, 79.1, 0.398; GCF_007993065.1, s__Paracoccus aurantiacus, 95.0, 78.95, 0.298; GCA_005768755.1, s__Paracoccus denitrificans_B, 95.0, 78.88, 0.289; GCF_002847305.1, s__Paracoccus sp002847305, 95.0, 78.88, 0.311; GCF_900199195.1, s__Paracoccus seriniphilus, 95.0, 78.66, 0.294; GCF_014490725.1, s__Paracoccus amoyensis, 95.0, 78.59, 0.301; GCA_003240735.1, s__Paracoccus denitrificans_A, 95.0, 78.52, 0.338; GCF_003591515.1, s__Paracoccus sp003591515, 95.0, 78.33, 0.268; GCF_003590715.1, s__Paracoccus sp003590715, 95.0, 77.93, 0.247 65.41 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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19 25 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__ N/A N/A N/A N/A N/A GCF_900129295.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__Flavisolibacter ginsengisoli 84.4 0.777 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Flavisolibacter;s__ taxonomic classification defined by topology and ANI classification based on placement in class-level tree GCA_002050435.1, s__Flavisolibacter sp002050435, 95.0, 77.03, 0.153; GCA_017745135.1, s__Flavisolibacter sp017745135, 95.0, 76.9, 0.111; GCF_003628535.1, s__Flavisolibacter nicotianae, 95.0, 76.85, 0.074; GCA_013327885.1, s__Flavisolibacter sp013327885, 95.0, 76.81, 0.084; GCA_014163555.1, s__Flavisolibacter sp014163555, 95.0, 76.57, 0.096; GCF_007970805.1, s__Flavisolibacter ginsenosidimutans, 95.0, 76.56, 0.057 98.29 11 0.98734 Genome not assigned to closest species as it falls outside its pre-defined ANI radius
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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20 26 d__Bacteria;p__Firmicutes_D;c__Proteinivoracia;o__Proteinivoracales;f__Proteinivoraceae;g__Anaerobranca;s__Anaerobranca californiensis GCF_900142275.1 95.0 d__Bacteria;p__Firmicutes_D;c__Proteinivoracia;o__Proteinivoracales;f__Proteinivoraceae;g__Anaerobranca;s__Anaerobranca californiensis 100.0 0.977 GCF_900142275.1 95.0 d__Bacteria;p__Firmicutes_D;c__Proteinivoracia;o__Proteinivoracales;f__Proteinivoraceae;g__Anaerobranca;s__Anaerobranca californiensis 100.0 0.977 d__Bacteria;p__Firmicutes_D;c__Proteinivoracia;o__Proteinivoracales;f__Proteinivoraceae;g__Anaerobranca;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_900111575.1, s__Anaerobranca gottschalkii, 95.0, 86.04, 0.802 87.59 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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21 27 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 97.48 0.867 GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 97.48 0.867 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_011362875.1, s__Hydrotalea flava_A, 95.0, 92.3, 0.83; GCA_001623405.1, s__Hydrotalea flava, 95.0, 78.35, 0.428 49.05 11 N/A Genome has more than 13.3% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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22 28 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 100.0 0.993 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 100.0 0.993 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_000702605.1, s__Exiguobacterium_A acetylicum, 95.0, 91.58, 0.944; GCF_001939065.1, s__Exiguobacterium_A indicum, 95.0, 91.28, 0.89; GCF_001275385.1, s__Exiguobacterium_A sp001275385, 95.0, 90.06, 0.899; GCA_902363455.1, s__Exiguobacterium_A sp902363455, 95.0, 81.7, 0.601; GCF_000620865.1, s__Exiguobacterium_A sibiricum_A, 95.0, 81.66, 0.637; GCF_014524545.1, s__Exiguobacterium_A sp004339505, 95.0, 81.61, 0.661; GCF_000702625.1, s__Exiguobacterium_A oxidotolerans, 95.0, 81.6, 0.65; GCF_018618755.1, s__Exiguobacterium_A sp018618755, 95.0, 81.59, 0.643; GCF_000019905.1, s__Exiguobacterium_A sibiricum, 95.0, 81.56, 0.64; GCF_003339585.1, s__Exiguobacterium_A sp003339585, 95.0, 81.55, 0.64; GCF_000620805.1, s__Exiguobacterium_A undae, 95.0, 81.4, 0.653; GCF_001870785.1, s__Exiguobacterium_A sp001870785, 95.0, 81.31, 0.624; GCF_000685865.1, s__Exiguobacterium_A antarcticum, 95.0, 81.27, 0.633; GCF_003344535.1, s__Exiguobacterium_A flavidum, 95.0, 79.69, 0.349 84.09 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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23 29 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 98.66 0.951 GCF_001423965.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__Exiguobacterium_A sp001423965 98.66 0.951 d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_000702605.1, s__Exiguobacterium_A acetylicum, 95.0, 89.97, 0.827; GCF_001939065.1, s__Exiguobacterium_A indicum, 95.0, 89.81, 0.795; GCF_001275385.1, s__Exiguobacterium_A sp001275385, 95.0, 88.32, 0.779; GCF_018618755.1, s__Exiguobacterium_A sp018618755, 95.0, 80.5, 0.481; GCF_000702625.1, s__Exiguobacterium_A oxidotolerans, 95.0, 80.47, 0.469; GCF_000620865.1, s__Exiguobacterium_A sibiricum_A, 95.0, 80.45, 0.467; GCF_000620805.1, s__Exiguobacterium_A undae, 95.0, 80.4, 0.466; GCA_902363455.1, s__Exiguobacterium_A sp902363455, 95.0, 80.39, 0.45; GCF_000685865.1, s__Exiguobacterium_A antarcticum, 95.0, 80.33, 0.451; GCF_000019905.1, s__Exiguobacterium_A sibiricum, 95.0, 80.31, 0.484; GCF_003339585.1, s__Exiguobacterium_A sp003339585, 95.0, 80.29, 0.477; GCF_014524545.1, s__Exiguobacterium_A sp004339505, 95.0, 80.22, 0.47; GCF_001870785.1, s__Exiguobacterium_A sp001870785, 95.0, 80.18, 0.481; GCF_003344535.1, s__Exiguobacterium_A flavidum, 95.0, 79.0, 0.248 73.13 11 N/A Genome has more than 13.3% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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24 3 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans GCF_900129225.1 95.0 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans 100.0 1.0 GCF_900129225.1 95.0 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans 100.0 1.0 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments N/A 16.46 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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25 30 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425265 GCF_001425265.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425265 100.0 1.0 GCF_001425265.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__Pseudoduganella sp001425265 100.0 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pseudoduganella;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_003053665.1, s__Pseudoduganella sp003053665, 95.0, 90.85, 0.868; GCF_001425045.1, s__Pseudoduganella sp001425045, 95.0, 90.63, 0.861; GCF_009857595.1, s__Pseudoduganella aquatica_A, 95.0, 89.77, 0.815; GCF_900116645.1, s__Pseudoduganella namucuonensis, 95.0, 85.71, 0.688; GCF_001191005.1, s__Pseudoduganella sp001191005, 95.0, 82.78, 0.593; GCF_014191875.1, s__Pseudoduganella violacea, 95.0, 82.72, 0.596; GCF_013369485.1, s__Pseudoduganella sp013369485, 95.0, 82.69, 0.586; GCA_008011715.1, s__Pseudoduganella haloabium, 95.0, 82.2, 0.58; GCF_009720835.1, s__Pseudoduganella buxea, 95.0, 82.11, 0.6; GCF_009857475.1, s__Pseudoduganella guangdongensis, 95.0, 82.09, 0.636; GCF_003028855.1, s__Pseudoduganella armeniaca, 95.0, 82.05, 0.601; GCF_009674485.1, s__Pseudoduganella sp009674485, 95.0, 81.97, 0.595; GCF_000425385.1, s__Pseudoduganella violaceinigra, 95.0, 81.81, 0.554; GCF_007830455.1, s__Pseudoduganella lurida, 95.0, 81.78, 0.586; GCF_004217275.1, s__Pseudoduganella sp004217275, 95.0, 81.75, 0.549; GCA_002454505.1, s__Pseudoduganella sp002454505, 95.0, 81.72, 0.592; GCF_009720745.1, s__Pseudoduganella eburnea, 95.0, 81.62, 0.569; GCF_001425005.1, s__Pseudoduganella sp001425005, 95.0, 81.59, 0.543; GCF_900113115.1, s__Pseudoduganella sp900113115, 95.0, 81.54, 0.555; GCF_001427305.1, s__Pseudoduganella sp001427305, 95.0, 81.37, 0.543; GCF_004322755.1, s__Pseudoduganella albidiflava, 95.0, 81.34, 0.549; GCF_014192225.1, s__Pseudoduganella umbonata, 95.0, 81.26, 0.528; GCF_009727155.1, s__Pseudoduganella dura, 95.0, 81.26, 0.541; GCF_004421005.1, s__Pseudoduganella plicata, 95.0, 81.21, 0.58; GCF_007830495.1, s__Pseudoduganella flava, 95.0, 81.1, 0.559; GCF_004209755.1, s__Pseudoduganella lutea, 95.0, 80.92, 0.516; GCF_009720865.1, s__Pseudoduganella ginsengisoli, 95.0, 80.7, 0.521 97.2 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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26 31 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia;s__Lampropedia hyalina GCF_900129055.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia;s__Lampropedia hyalina 100.0 1.0 GCF_900129055.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia;s__Lampropedia hyalina 100.0 1.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Lampropedia;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_004217315.1, s__Lampropedia populi, 95.0, 79.06, 0.425; GCA_002285265.1, s__Lampropedia sp002285265, 95.0, 79.05, 0.389; GCA_002285285.1, s__Lampropedia sp002285285, 95.0, 78.85, 0.367; GCA_003703475.1, s__Lampropedia sp003703475, 95.0, 78.75, 0.327; GCF_001005215.1, s__Lampropedia cohaerens, 95.0, 78.15, 0.303; GCF_004803635.1, s__Lampropedia aestuarii, 95.0, 77.37, 0.192; GCF_004833285.1, s__Lampropedia puyangensis, 95.0, 76.97, 0.131 97.26 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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27 32 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__Phycicoccus sp001428065 GCF_001428065.1 95.0 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__Phycicoccus sp001428065 99.99 0.997 GCF_001428065.1 95.0 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__Phycicoccus sp001428065 99.99 0.997 d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Dermatophilaceae;g__Phycicoccus;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_002846495.1, s__Phycicoccus duodecadis, 95.0, 92.25, 0.859; GCF_011383005.1, s__Phycicoccus sp011383005, 95.0, 84.56, 0.741; GCF_016887965.1, s__Phycicoccus sp016887965, 95.0, 84.46, 0.714; GCF_000720925.1, s__Phycicoccus jejuensis, 95.0, 84.36, 0.722; GCF_013201035.1, s__Phycicoccus sp013201035, 95.0, 84.23, 0.736; GCA_014763705.1, s__Phycicoccus sp014763705, 95.0, 84.07, 0.661; GCF_004025965.2, s__Phycicoccus flavus, 95.0, 83.51, 0.697; GCF_011326735.1, s__Phycicoccus endophyticus, 95.0, 82.86, 0.667; GCF_016888005.1, s__Phycicoccus sp016888005, 95.0, 82.78, 0.656; GCF_018139485.1, s__Phycicoccus sp018139485, 95.0, 82.55, 0.623 96.03 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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28 33 Unclassified Bacteria N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A Insufficient number of amino acids in MSA (6.6%)
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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29 34 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter;s__Anaerosporobacter mobilis GCF_900142955.1 95.0 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter;s__Anaerosporobacter mobilis 100.0 0.997 GCF_900142955.1 95.0 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter;s__Anaerosporobacter mobilis 100.0 0.997 d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Anaerosporobacter;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_018372435.1, s__Anaerosporobacter sp018372435, 95.0, 94.7, 0.913; GCF_012070565.1, s__Anaerosporobacter sp012070565, 95.0, 79.12, 0.355 54.65 11 N/A Genome has more than 11.7% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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30 35 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans GCF_900129225.1 95.0 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans 100.0 1.0 GCF_900129225.1 95.0 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;s__Schwartzia succinivorans 100.0 1.0 d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments N/A 81.67 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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31 36 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 97.73 0.846 GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 97.73 0.846 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_011362875.1, s__Hydrotalea flava_A, 95.0, 92.52, 0.741; GCA_001623405.1, s__Hydrotalea flava, 95.0, 78.56, 0.446 38.4 11 N/A Genome has more than 12.5% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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32 37 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 99.13 0.933 GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 99.13 0.933 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_011362875.1, s__Hydrotalea flava_A, 95.0, 93.75, 0.894; GCA_001623405.1, s__Hydrotalea flava, 95.0, 78.83, 0.519 68.78 11 N/A Genome has more than 15.0% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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33 38 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus denitrificans GCF_900100045.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus denitrificans 99.47 0.878 GCF_900100045.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__Paracoccus denitrificans 99.47 0.878 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_001447385.1, s__Paracoccus sp001447385, 95.0, 92.4, 0.686; GCF_008824185.1, s__Paracoccus pantotrophus, 95.0, 91.75, 0.773; GCF_000518925.1, s__Paracoccus sp000518925, 95.0, 91.5, 0.76; GCF_000763885.1, s__Paracoccus versutus, 95.0, 91.37, 0.686; GCF_016446475.1, s__Paracoccus binzhouensis, 95.0, 89.81, 0.692; GCF_900156255.1, s__Paracoccus thiocyanatus, 95.0, 89.57, 0.812; GCF_016919705.1, s__Paracoccus sp002359815, 95.0, 87.44, 0.75; GCF_900005615.1, s__Paracoccus aminovorans, 95.0, 87.41, 0.693; GCF_001546115.1, s__Paracoccus aminovorans_B, 95.0, 87.27, 0.674; GCF_000622145.1, s__Paracoccus yeei, 96.0533, 84.9, 0.628; GCF_003337565.1, s__Paracoccus lutimaris, 95.0, 84.81, 0.638; GCF_003285265.1, s__Paracoccus mutanolyticus, 96.0533, 84.8, 0.689; GCF_009301415.1, s__Paracoccus kondratievae, 95.0, 84.68, 0.698; GCA_018056045.1, s__Paracoccus sp018056045, 95.0, 84.65, 0.696; GCF_000763905.1, s__Paracoccus halophilus, 95.0, 84.44, 0.631; GCF_009711185.1, s__Paracoccus limosus, 95.0, 84.27, 0.672; GCF_009696685.1, s__Paracoccus sp009696685, 95.0, 83.89, 0.751; GCF_003709565.1, s__Paracoccus siganidrum, 95.0, 83.61, 0.588; GCF_009711265.1, s__Paracoccus sp009711265, 95.0, 83.19, 0.594; GCF_009711205.1, s__Paracoccus litorisediminis, 95.0, 83.06, 0.496; GCF_004522175.1, s__Paracoccus ravus, 95.0, 82.44, 0.549; GCF_007830335.1, s__Paracoccus sulfuroxidans, 95.0, 82.23, 0.59; GCF_900182695.1, s__Paracoccus laeviglucosivorans, 95.0, 82.18, 0.589; GCF_900142875.1, s__Paracoccus solventivorans, 95.0, 82.17, 0.628; GCF_018860165.1, s__Paracoccus sp018860165, 95.0, 82.15, 0.554; GCF_900631945.1, s__Paracoccus haematequi, 95.0, 81.7, 0.572; GCF_000763805.1, s__Paracoccus sphaerophysae, 95.0, 81.61, 0.647; GCF_009708075.1, s__Paracoccus lichenicola, 95.0, 81.58, 0.568; GCF_017356265.1, s__Paracoccus fontiphilus, 95.0, 81.57, 0.555; GCF_017315735.1, s__Paracoccus sp017315735, 95.0, 81.56, 0.582; GCF_014642735.1, s__Paracoccus acridae, 95.0, 81.46, 0.531; GCF_009711225.1, s__Paracoccus aestuariivivens, 95.0, 81.45, 0.501; GCF_900110285.1, s__Paracoccus alcaliphilus, 95.0, 81.35, 0.518; GCF_900108405.1, s__Paracoccus alkenifer, 95.0, 81.32, 0.632; GCF_002847445.1, s__Paracoccus zhejiangensis, 95.0, 81.31, 0.521; GCF_014656455.1, s__Paracoccus aerius, 95.0, 81.25, 0.5; GCF_002287065.1, s__Paracoccus salipaludis, 95.0, 81.24, 0.59; GCF_003286075.1, s__Paracoccus endophyticus, 95.0, 81.19, 0.633; GCF_004522155.1, s__Paracoccus luteus, 95.0, 81.14, 0.64; GCF_019061185.1, s__Paracoccus sp019061185, 95.0, 81.1, 0.59; GCF_003594815.1, s__Paracoccus aestuarii, 95.0, 81.02, 0.562; GCF_005048225.1, s__Paracoccus gahaiensis, 95.0, 80.97, 0.51; GCF_900102885.1, s__Paracoccus chinensis, 95.0, 80.96, 0.568; GCF_016617715.1, s__Paracoccus sp014164625, 95.0, 80.89, 0.535; GCF_004683865.2, s__Paracoccus liaowanqingii, 95.0, 80.86, 0.427; GCF_900106665.1, s__Paracoccus sanguinis, 95.0, 80.78, 0.592; GCF_002865605.1, s__Paracoccus jeotgali, 95.0, 80.75, 0.541; GCF_900102505.1, s__Paracoccus tibetensis, 95.0, 80.74, 0.513; GCF_900188295.1, s__Paracoccus sediminis, 95.0, 80.67, 0.55; GCF_013868135.1, s__Paracoccus sp013868135, 95.0, 80.63, 0.53; GCF_000420145.1, s__Paracoccus zeaxanthinifaciens, 95.0, 80.6, 0.599; GCF_004310345.1, s__Paracoccus subflavus, 95.0, 80.57, 0.568; GCF_003007735.2, s__Paracoccus marinus_A, 95.0, 80.54, 0.46; GCF_005048265.1, s__Paracoccus hibiscisoli, 95.0, 80.54, 0.525; GCF_006151785.1, s__Paracoccus marcusii, 95.0, 80.51, 0.535; GCF_002105555.1, s__Paracoccus contaminans, 95.0, 80.5, 0.591; GCA_002294185.1, s__Paracoccus sp002294185, 95.0, 80.4, 0.553; GCF_000787695.1, s__Paracoccus sp000787695, 95.0, 80.39, 0.477; GCF_004923205.2, s__Paracoccus aeridis, 95.0, 80.31, 0.542; GCF_018860625.1, s__Paracoccus sp018860625, 95.0, 80.27, 0.506; GCF_007096355.1, s__Paracoccus sp007096355, 95.0, 80.26, 0.484; GCF_000444995.1, s__Paracoccus aminophilus, 95.0, 80.24, 0.428; GCF_007018965.1, s__Paracoccus marinus, 95.0, 80.24, 0.573; GCF_003056335.1, s__Paracoccus indicus, 95.0, 80.18, 0.534; GCF_011308835.1, s__Paracoccus xiamenensis, 95.0, 80.14, 0.509; GCF_900111675.1, s__Paracoccus homiensis, 95.0, 80.1, 0.465; GCF_017744015.1, s__Paracoccus sp002732665, 95.0, 80.09, 0.47; GCF_009674885.1, s__Paracoccus sp009674885, 95.0, 80.06, 0.484; GCF_900101865.1, s__Paracoccus isoporae, 95.0, 80.06, 0.506; GCA_003255745.1, s__Paracoccus saliphilus_A, 95.0, 80.05, 0.49; GCF_003697785.1, s__Paracoccus alkanivorans, 95.0, 80.0, 0.421; GCF_016629665.1, s__Paracoccus caeni, 95.0, 79.96, 0.482; GCF_003259195.1, s__Paracoccus sediminilitoris, 95.0, 79.92, 0.502; GCA_016869875.1, s__Paracoccus sp016869875, 95.0, 79.86, 0.406; GCF_004335005.1, s__Paracoccus sp004335005, 95.0, 79.84, 0.456; GCA_900156835.1, s__Paracoccus saliphilus, 95.0, 79.58, 0.378; GCF_003324675.1, s__Paracoccus suum, 95.0, 79.37, 0.5; GCF_002847305.1, s__Paracoccus sp002847305, 95.0, 79.07, 0.407; GCA_005768755.1, s__Paracoccus denitrificans_B, 95.0, 78.95, 0.364; GCF_900199195.1, s__Paracoccus seriniphilus, 95.0, 78.94, 0.373; GCF_007993065.1, s__Paracoccus aurantiacus, 95.0, 78.87, 0.377; GCF_014490725.1, s__Paracoccus amoyensis, 95.0, 78.85, 0.391; GCA_003240735.1, s__Paracoccus denitrificans_A, 95.0, 78.69, 0.439; GCF_003591515.1, s__Paracoccus sp003591515, 95.0, 78.33, 0.332; GCF_003590715.1, s__Paracoccus sp003590715, 95.0, 78.23, 0.32 65.59 11 N/A Genome has more than 33.3% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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34 4 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 99.99 0.99 GCF_003254115.1 95.0 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__Hydrotalea sandarakina 99.99 0.99 d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Chitinophagaceae;g__Hydrotalea;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_011362875.1, s__Hydrotalea flava_A, 95.0, 94.51, 0.932; GCA_001623405.1, s__Hydrotalea flava, 95.0, 79.19, 0.591 26.13 11 N/A Genome has more than 73.3% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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35 5 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Meinhardsimonia;s__Meinhardsimonia xiamenensis GCF_900102905.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Meinhardsimonia;s__Meinhardsimonia xiamenensis 100.0 0.999 GCF_900102905.1 95.0 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Meinhardsimonia;s__Meinhardsimonia xiamenensis 100.0 0.999 d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments N/A 91.46 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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36 6 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter;s__ N/A N/A N/A N/A N/A GCF_014489475.1 95.0 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter;s__Lysobacter solisilvae 87.17 0.796 d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Lysobacter;s__ taxonomic classification defined by topology and ANI classification based on placement in class-level tree GCF_001427225.1, s__Lysobacter sp001427225, 95.0, 84.08, 0.726; GCF_016613535.2, s__Lysobacter solisilvae_A, 95.0, 82.93, 0.69; GCF_003814555.1, s__Lysobacter tengchongensis, 95.0, 82.62, 0.619; GCF_009765165.1, s__Lysobacter panacisoli, 95.0, 82.36, 0.64; GCF_003586305.1, s__Lysobacter tabacisoli, 95.0, 82.33, 0.649; GCF_016613475.2, s__Lysobacter arenosi, 95.0, 82.23, 0.643; GCF_009765215.1, s__Lysobacter prati, 95.0, 82.11, 0.618; GCF_017308985.1, s__Lysobacter sp017308985, 95.0, 82.08, 0.634; GCF_003382365.1, s__Lysobacter silvisoli, 95.0, 82.05, 0.664; GCF_900114355.1, s__Lysobacter sp900114355, 95.0, 82.04, 0.665; GCF_015453285.1, s__Lysobacter niastensis, 95.0, 82.04, 0.658; GCF_016735495.2, s__Lysobacter sp016735495, 95.0, 82.01, 0.647; GCA_013361435.1, s__Lysobacter sp013361435, 95.0, 81.93, 0.591; GCF_000768335.1, s__Lysobacter arseniciresistens, 95.0, 81.92, 0.555; GCF_003382285.1, s__Lysobacter soli, 95.0, 81.87, 0.642; GCF_001428685.1, s__Lysobacter sp001428685, 95.0, 81.87, 0.682; GCF_001429785.1, s__Lysobacter sp001429785, 95.0, 81.8, 0.669; GCF_900107375.1, s__Lysobacter sp900107375, 95.0, 81.79, 0.691; GCF_007923255.1, s__Lysobacter thermophilus, 95.0, 81.78, 0.578; GCF_001442515.1, s__Lysobacter enzymogenes_B, 95.0, 81.68, 0.712; GCF_017355525.1, s__Lysobacter enzymogenes_C, 95.0, 81.68, 0.672; GCF_000336385.2, s__Lysobacter antibioticus_A, 95.0, 81.66, 0.632; GCA_005503055.1, s__Lysobacter sp005503055, 95.0, 81.61, 0.628; GCF_000768355.1, s__Lysobacter daejeonensis, 95.0, 81.58, 0.548; GCF_018847975.1, s__Lysobacter sp018847975, 95.0, 81.55, 0.673; GCF_007830115.1, s__Lysobacter ruishenii, 95.0, 81.54, 0.556; GCF_900106525.1, s__Lysobacter enzymogenes, 95.0, 81.48, 0.687; GCF_001442535.1, s__Lysobacter antibioticus, 95.0, 81.4, 0.632; GCF_000731095.1, s__Lysobacter antibioticus_B, 95.0, 81.36, 0.618; GCF_003719825.1, s__Lysobacter psychrotolerans, 95.0, 81.34, 0.604; GCF_006546735.2, s__Lysobacter maris, 95.0, 81.34, 0.541; GCF_014651995.1, s__Lysobacter xinjiangensis, 95.0, 81.28, 0.546; GCF_014779555.1, s__Lysobacter capsici, 95.0, 81.21, 0.638; GCF_907164845.1, s__Lysobacter sp907164845, 95.0, 81.17, 0.576; GCF_001442805.1, s__Lysobacter gummosus, 95.0, 81.17, 0.642; GCF_018612875.1, s__Lysobacter sp018612875, 95.0, 81.13, 0.619; GCF_018732085.1, s__Lysobacter capsici_A, 95.0, 81.1, 0.67; GCA_001830245.1, s__Lysobacter sp001830245, 95.0, 81.08, 0.56; GCF_001427785.1, s__Lysobacter sp001427785, 95.0, 81.08, 0.623; GCF_014145325.1, s__Lysobacter spongiae, 95.0, 81.05, 0.553; GCF_004359965.1, s__Lysobacter segetis, 95.0, 81.01, 0.575; GCF_006546775.1, s__Lysobacter aestuarii, 95.0, 80.97, 0.546; GCF_006547045.1, s__Lysobacter alkalisoli, 95.0, 80.94, 0.566; GCF_000768345.1, s__Lysobacter concretionis, 95.0, 80.78, 0.518; GCF_014145395.1, s__Lysobacter penaei, 95.0, 80.76, 0.502; GCF_004361065.1, s__Lysobacter terrigena, 95.0, 80.55, 0.508; GCF_003367355.1, s__Lysobacter sp003367355, 95.0, 80.54, 0.516; GCF_000423325.1, s__Lysobacter defluvii, 95.0, 80.42, 0.515; GCF_000426005.1, s__Lysobacter sp000426005, 95.0, 80.4, 0.515; GCF_015209725.1, s__Lysobacter sp015209725, 95.0, 80.29, 0.481; GCF_900167055.1, s__Lysobacter spongiicola, 95.0, 80.25, 0.489; GCF_014652095.1, s__Lysobacter bugurensis, 95.0, 80.25, 0.522; GCF_008274655.1, s__Lysobacter lacus, 95.0, 80.01, 0.52; GCF_015209765.1, s__Lysobacter sp015209765, 95.0, 79.97, 0.484; GCA_004322525.1, s__Lysobacter sp004322525, 95.0, 79.81, 0.529; GCA_902805755.1, s__Lysobacter sp902805755, 95.0, 79.81, 0.544; GCF_000855665.1, s__Lysobacter sp000855665, 95.0, 79.58, 0.461 72.88 11 0.98425 Genome not assigned to closest species as it falls outside its pre-defined ANI radius
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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37 7 d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfatibacillaceae;g__Desulfatibacillum;s__Desulfatibacillum alkenivorans GCF_900142135.1 95.0 d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfatibacillaceae;g__Desulfatibacillum;s__Desulfatibacillum alkenivorans 100.0 1.0 GCF_900142135.1 95.0 d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfatibacillaceae;g__Desulfatibacillum;s__Desulfatibacillum alkenivorans 100.0 1.0 d__Bacteria;p__Desulfobacterota;c__Desulfobacteria;o__Desulfobacterales;f__Desulfatibacillaceae;g__Desulfatibacillum;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCF_000429905.1, s__Desulfatibacillum aliphaticivorans, 95.0, 93.06, 0.876; GCA_016342355.1, s__Desulfatibacillum sp016342355, 95.0, 79.44, 0.52 85.86 11 N/A N/A
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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38 8 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 99.22 0.892 GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 99.22 0.892 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_017388605.1, s__Anaeroplasma sp017388605, 95.0, 83.89, 0.71; GCA_017449215.1, s__Anaeroplasma sp017449215, 95.0, 78.37, 0.262; GCA_017441525.1, s__Anaeroplasma sp017441525, 95.0, 78.17, 0.272; GCA_002449755.1, s__Anaeroplasma sp002449755, 95.0, 78.14, 0.275; GCA_017462645.1, s__Anaeroplasma sp017462645, 95.0, 78.0, 0.236; GCA_017524905.1, s__Anaeroplasma sp017524905, 95.0, 77.92, 0.242; GCA_016280975.1, s__Anaeroplasma sp016280975, 95.0, 77.86, 0.273; GCA_017444645.1, s__Anaeroplasma sp017444645, 95.0, 77.57, 0.26; GCA_900770055.1, s__Anaeroplasma sp900770055, 95.0, 77.54, 0.192; GCA_902783745.1, s__Anaeroplasma sp902783745, 95.0, 77.5, 0.231; GCA_016282815.1, s__Anaeroplasma sp016282815, 95.0, 77.44, 0.216; GCA_017542485.1, s__Anaeroplasma sp017542485, 95.0, 77.43, 0.189; GCA_016288855.1, s__Anaeroplasma sp016288855, 95.0, 77.42, 0.212; GCA_015059145.1, s__Anaeroplasma sp015059145, 95.0, 77.4, 0.199; GCA_900767915.1, s__Anaeroplasma sp900767915, 95.0, 77.38, 0.187; GCA_017454375.1, s__Anaeroplasma sp017454375, 95.0, 77.11, 0.128; GCA_902796895.1, s__Anaeroplasma sp902796895, 95.0, 76.99, 0.242; GCA_018715825.1, s__Anaeroplasma faecigallinarum, 95.0, 76.73, 0.118; GCA_905236965.1, s__Anaeroplasma sp905236965, 95.0, 76.07, 0.2; GCA_905236105.1, s__Anaeroplasma sp905236105, 95.0, 76.05, 0.133 57.15 11 N/A Genome has more than 10.0% of markers with multiple hits
1e10251b9615 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/amber/ commit 91090b1565baeddbd3c96e74bc08a37990fafd3a
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39 9 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 100.0 1.0 GCF_003550015.1 95.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__Anaeroplasma bactoclasticum 100.0 1.0 d__Bacteria;p__Firmicutes;c__Bacilli;o__Acholeplasmatales;f__Anaeroplasmataceae;g__Anaeroplasma;s__ taxonomic classification defined by topology and ANI topological placement and ANI have congruent species assignments GCA_017388605.1, s__Anaeroplasma sp017388605, 95.0, 84.15, 0.658; GCA_002449755.1, s__Anaeroplasma sp002449755, 95.0, 78.65, 0.256; GCA_017441525.1, s__Anaeroplasma sp017441525, 95.0, 78.34, 0.265; GCA_017449215.1, s__Anaeroplasma sp017449215, 95.0, 78.33, 0.263; GCA_017524905.1, s__Anaeroplasma sp017524905, 95.0, 78.01, 0.244; GCA_017462645.1, s__Anaeroplasma sp017462645, 95.0, 78.0, 0.23; GCA_016280975.1, s__Anaeroplasma sp016280975, 95.0, 77.96, 0.23; GCA_017542485.1, s__Anaeroplasma sp017542485, 95.0, 77.74, 0.195; GCA_017444645.1, s__Anaeroplasma sp017444645, 95.0, 77.7, 0.258; GCA_900767915.1, s__Anaeroplasma sp900767915, 95.0, 77.52, 0.172; GCA_016288855.1, s__Anaeroplasma sp016288855, 95.0, 77.51, 0.196; GCA_902783745.1, s__Anaeroplasma sp902783745, 95.0, 77.5, 0.209; GCA_016282815.1, s__Anaeroplasma sp016282815, 95.0, 77.5, 0.201; GCA_900770055.1, s__Anaeroplasma sp900770055, 95.0, 77.43, 0.184; GCA_015059145.1, s__Anaeroplasma sp015059145, 95.0, 77.28, 0.183; GCA_902796895.1, s__Anaeroplasma sp902796895, 95.0, 77.2, 0.221; GCA_017454375.1, s__Anaeroplasma sp017454375, 95.0, 77.19, 0.129; GCA_018715825.1, s__Anaeroplasma faecigallinarum, 95.0, 76.79, 0.111; GCA_905236965.1, s__Anaeroplasma sp905236965, 95.0, 76.42, 0.19; GCA_905236105.1, s__Anaeroplasma sp905236105, 95.0, 76.12, 0.118 66.58 11 N/A N/A