Mercurial > repos > iuc > biom_from_uc
view biom_from_uc.xml @ 1:7d28b9d64546 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/biom_format commit f1b3e36f79747fca391321389276ac196d3f7cd0"
author | iuc |
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date | Fri, 24 Jan 2020 16:40:54 -0500 |
parents | 26c9cf427dcd |
children | 2cdeed709bf4 |
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<tool id="biom_from_uc" name="Create a BIOM table" version="@VERSION@.1"> <description>from a vsearch/uclust/usearch BIOM file</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <expand macro="version_command" /> <command detect_errors="exit_code"> <![CDATA[ biom from-uc --input-fp '$input_fp' --output-fp '$output_fp' ]]> </command> <inputs> <param name="input_fp" argument="--input-fp" type="data" format="txt" label="UC File" /> <param name="rep_set_fp" argument="--rep-set-fp" type="data" format="fasta" optional="true" label="Fasta file containing representative sequences with where sequences are labeled with OTU identifiers, and description fields contain original sequence identifiers" help="This output is created, for example, by vsearch with the --relabel_sha1 --relabel_keep options."/> </inputs> <outputs> <data format="biom1" name="output_fp"/> </outputs> <tests> <test> <param name="input_fp" value="uc_table.uc" /> <output name="output_fp" file="biom_from_uc.biom" compare="sim_size"/> </test> </tests> <help><![CDATA[ Create a BIOM table from a vsearch/uclust/usearch BIOM file. ]]></help> <expand macro="citations" /> </tool>