annotate test-data/tiny_ref.embl @ 1:58234d95978d draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/biotradis commit 61c83ac999a040604915ff7cf92670b2635b967e"

ID   CP009273; SV 1; circular; genomic DNA; STD; PRO; 4631469 BP.
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AC   CP009273;
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PR   Project:PRJNA257976;
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DT   10-SEP-2014 (Rel. 122, Created)
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DE   Escherichia coli BW25113, complete genome.
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KW   .
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OS   Escherichia coli BW25113
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
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RN   [1]
RP   1-4631469
RA   Grenier F., Matteau D., Baby V., Rodrigue S.;
RT   "Complete genome sequence of Escherichia coli BW25113";
RL   Unpublished.
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CC   ##Genome-Assembly-Data-START##
CC   Assembly Method           :: Newbler v. 2.6
CC   Reference-guided Assembly :: U00096.3
CC   Genome Coverage           :: 100x
CC   Sequencing Technology     :: Illumina HiSeq; Sanger
CC   ##Genome-Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..300
FT                   /organism="Escherichia coli BW25113"
FT                   /strain="K-12"
FT                   /sub_strain="BW25113"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Indiana"
FT                   /collection_date="2000"
FT                   /note="from B. L. Wanner laboratory; genotype: rrnB3
FT                   lacZ4787 hsdR514 (araBAD)567 (rhaBAD)568 rph-1"
FT                   /db_xref="taxon:679895"
FT                   /culture_collection="CGSC:7636"
FT   gene            190..255
FT                   /gene="thrL"
FT                   /gene_synonym="ECK0001"
FT                   /gene_synonym="JW4367"
FT                   /locus_tag="BW25113_0001"
FT   CDS             190..255
FT                   /codon_start=1
FT                   /transl_table=11
FT                   /gene="thrL"
FT                   /gene_synonym="ECK0001"
FT                   /gene_synonym="JW4367"
FT                   /locus_tag="BW25113_0001"
FT                   /product="thr operon leader peptide"
FT                   /function="leader; Amino acid biosynthesis: Threonine"
FT                   /db_xref="EnsemblGenomes-Gn:BW25113_0001"
FT                   /db_xref="EnsemblGenomes-Tr:AIN30539"
FT                   /protein_id="AIN30539.1"
FT                   /translation="MKRISTTITTTITITTGNGAG"
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SQ   Sequence 4631469 BP; 1140509 A; 1177154 C; 1174646 G; 1139160 T; 0 other;
     agcttttcat tctgactgca acgggcaata tgtctctgtg tggattaaaa aaagagtgtc        60
     tgatagcagc ttctgaactg gttacctgcc gtgagtaaat taaaatttta ttgacttagg       120
     tcactaaata ctttaaccaa tataggcata gcgcacagac agataaaaat tacagagtac       180
     acaacatcca tgaaacgcat tagcaccacc attaccacca ccatcaccat taccacaggt       240
     aacggtgcgg gctgacgcgt acaggaaaca cagaaaaaag cccgcacctg acagtgcggg       300
//