Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_001416 41,716 (T)5→9 coding (636/873 nt) NinC → NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 417110 (0.000)30 (1.300)
+TTTT
20/80 0.0 100% coding (631/873 nt) NinC NinC protein
?NC_001416 41712 = 0 (0.000)coding (632/873 nt) NinC NinC protein

ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_001416/41663‑41711
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGA  >  NC_001416/41712‑41760
                                                 ||||                                                  
ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGT                                                       >  1:2333/1‑50
 CGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTT                                                      <  1:2106/50‑1
   CAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTT                                                    <  1:848/50‑1
   CAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTT                                                    <  1:2446/50‑1
    AAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTT                                                   <  1:3836/50‑1
       AAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTT                                                >  1:3602/1‑50
        AATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT                                               >  1:2000/1‑50
          TCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAA                                            >  1:660/1‑50
            GGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATG                                          >  1:4975/1‑50
               ccTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGG                                       >  1:1102/3‑50
                   CCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGGGTCATC                                  <  1:2314/50‑1
                     TGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTTATCA                                 <  1:3862/50‑1
                      GCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCAC                                >  1:1552/1‑50
                       CAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACG                               <  1:4917/50‑1
                         aaaATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGG                             <  1:4950/47‑1
                         AAGATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGG                             <  1:3359/50‑1
                           tATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGAT                           <  1:2017/49‑1
                           GATGAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGAa                           >  1:160/1‑49
                              GAGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCC                        <  1:2102/50‑1
                              GAGGAGGGATTGCAGCGTGTTTTTTTTTAATGGGTCATCACGGTATCCCA                       >  1:4736/1‑50
                               AGGAGGGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCA                       >  1:3880/1‑50
                                GGAGGGATTGAAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCAT                      <  1:4232/50‑1
                                 GAGGGATTGCAGCGTGTTTTTTTTTGAATGAGGTCATCACGGGATCCCAT                      >  1:3227/1‑50
                                    GGATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCATGTGC                  >  1:296/1‑50
                                      ATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCATGTGCGT                <  1:4850/50‑1
                                      ATTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCATGTGCGT                <  1:4592/50‑1
                                       TTGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTG               <  1:914/50‑1
                                        TGCAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGA              >  1:1707/1‑50
                                          CAGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACG            <  1:3541/50‑1
                                           AGCGTGTTTTTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGG           <  1:533/50‑1
                                                    TTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGA  >  1:5/1‑50
                                                 ||||                                                  
ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_001416/41663‑41711
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGA  >  NC_001416/41712‑41760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.