Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC | NC_001416 | 41,716 | (T)5→9 | coding (636/873 nt) | NinC → | NinC protein |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 41711 | 0 (0.000) | 30 (1.300) +TTTT |
20/80 | 0.0 | 100% | coding (631/873 nt) | NinC | NinC protein |
? | NC_001416 | 41712 = | 0 (0.000) | coding (632/873 nt) | NinC | NinC protein |
ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_001416/41663‑41711 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGA > NC_001416/41712‑41760 |||| ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGT > 1:2333/1‑50 CGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTT < 1:2106/50‑1 CAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTT < 1:848/50‑1 CAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTT < 1:2446/50‑1 AAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTT < 1:3836/50‑1 AAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTT > 1:3602/1‑50 AATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT > 1:2000/1‑50 TCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AA > 1:660/1‑50 GGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATG > 1:4975/1‑50 ccTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGG > 1:1102/3‑50 CCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATG‑GGTCATC < 1:2314/50‑1 TGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTTATCA < 1:3862/50‑1 GCAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCAC > 1:1552/1‑50 CAAAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACG < 1:4917/50‑1 aaaATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGG < 1:4950/47‑1 AAGATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGG < 1:3359/50‑1 tATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGAT < 1:2017/49‑1 GATGAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGAa > 1:160/1‑49 GAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCC < 1:2102/50‑1 GAGGAGGGATTGCAGCGTGTTTTTTTTT‑AATG‑GGTCATCACGGTATCCCA > 1:4736/1‑50 AGGAGGGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCA > 1:3880/1‑50 GGAGGGATTGAAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCAT < 1:4232/50‑1 GAGGGATTGCAGCGTGTTTTTTTTTGAATGAGGTCATCACGGGATCCCAT > 1:3227/1‑50 GGATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCATGTGC > 1:296/1‑50 ATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGT < 1:4850/50‑1 ATTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGT < 1:4592/50‑1 TTGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTG < 1:914/50‑1 TGCAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGA > 1:1707/1‑50 CAGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACG < 1:3541/50‑1 AGCGTGTTTTTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGG < 1:533/50‑1 TTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGA > 1:5/1‑50 |||| ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_001416/41663‑41711 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGA > NC_001416/41712‑41760 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |