Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_001416 44,075 (CAAA)2→1 coding (190‑193/624 nt) Q → late gene regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_001416 44075 44078 4 28 [0] [0] 27 Q late gene regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 440740 (0.000)25 (1.110) 20/88 0.0 100% coding (189/624 nt) Q late gene regulator
?NC_001416 44079 = 0 (0.000)coding (194/624 nt) Q late gene regulator

ATTCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_001416/44023‑44074
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA  >  NC_001416/44079‑44124
                                                                                                    
ATTCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCGAGAACGAC                                                    >  1:891/1‑50
  TCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAA                                                 >  1:4389/1‑50
   CGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAA                                                <  1:4433/50‑1
    GGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGAGAAAAG                                               >  1:1245/1‑50
       ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAAGGCT                                            <  1:1353/50‑1
       ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAAGGCT                                            <  1:3579/50‑1
          GCTGCATTCTGCGGTAACACGAACTCAGCCAGAACGACAAAAGGCTATCA                                       >  1:1880/1‑50
              CATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACT                                    <  1:1034/50‑1
              CATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACT                                    >  1:4699/1‑50
               ATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTA                                   >  1:3706/1‑50
                TTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTAT                                  >  1:2441/1‑50
                 TCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTATC                                 >  1:1581/1‑50
                      tGTAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATG                            >  1:3450/2‑50
                      GGTAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATG                            >  1:3687/1‑50
                        TAAGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCA                          >  1:2616/1‑50
                          AGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAAT                        >  1:2729/1‑50
                          AGCACGAACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAAT                        >  1:3955/1‑50
                             ACGAACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAATTTG                     <  1:2537/50‑1
                              CGAACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAATTTGC                    >  1:2909/1‑50
                                AACTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAATTTGCAC                  >  1:4610/1‑50
                                  CTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAATTTGCACAC                >  1:4258/1‑50
                                  CTCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAATTAGCACAC                >  1:3221/1‑50
                                   TCAGCCAGAACGACAAAAGGCTATCAACTATCTGATGCAATTTGCACACA               >  1:4745/1‑50
                                        CAGAACGACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTA          >  1:3719/1‑50
                                          AGAACGACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTAT         >  1:2144/1‑50
                                              CGACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGGG     >  1:4253/1‑50
                                              CGACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAAGTATCGGG     >  1:2330/1‑50
                                                 CAAAAGGCTATACAACTATCTGATGCAATTTGCACACAAGGTATCGGGGA   <  1:916/50‑1
                                                 CAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGGATCGGGGAA  >  1:4603/1‑50
                                                                                                    
ATTCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_001416/44023‑44074
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA  >  NC_001416/44079‑44124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.