Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_001416 44,075 (CAAA)2→1 coding (190‑193/624 nt) Q → late gene regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_001416 44075 44078 4 28 [0] [0] 27 Q late gene regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 440740 (0.000)25 (1.110) 20/88 0.0 100% coding (189/624 nt) Q late gene regulator
?NC_001416 44079 = 0 (0.000)coding (194/624 nt) Q late gene regulator

ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA  >  NC_001416/44030‑44124
                                                 |                                              
cggtatggctgcattctgcggtaagcacgaactcagccagaacgacaaaa                                                <  1:4433‑M2/1‑1 (MQ=255)
 ggtatggctgcattctgcggtaagcacgaactcagccagaacgagaaaAg                                               >  1:1245‑M2/49‑50 (MQ=255)
    atggctgcattctgcggtaagcacgaactcagccagaacgacaaaAGGCt                                            <  1:3579‑M2/5‑1 (MQ=255)
    atggctgcattctgcggtaagcacgaactcagccagaacgacaaaAGGCt                                            <  1:1353‑M2/5‑1 (MQ=255)
        gctgcattctgcggtaacacgaactcagccagaacgacaaaAGGCTATCa                                       >  1:1880‑M2/42‑50 (MQ=255)
           cattctgcggtaagcacgaactcagccagaacgacaaaAGGCTATCAACt                                    <  1:1034‑M2/12‑1 (MQ=255)
           cattctgcggtaagcacgaactcagccagaacgacaaaAGGCTATCAACt                                    >  1:4699‑M2/39‑50 (MQ=255)
            attctgcggtaagcacgaactcagccagaacgacaaaAGGCTATCAACTa                                   >  1:3706‑M2/38‑50 (MQ=255)
             ttctgcggtaagcacgaactcagccagaacgacaaaAGGCTATCAACTAt                                  >  1:2441‑M2/37‑50 (MQ=255)
              tctgcggtaagcacgaactcagccagaacgacaaaAGGCTATCAACTATc                                 >  1:1581‑M2/36‑50 (MQ=255)
                   tgtaagcacgaactcagccagaacgacaaaAGGCTATCAACTATCTGATg                            >  1:3450‑M2/31‑50 (MQ=255)
                   ggtaagcacgaactcagccagaacgacaaaAGGCTATCAACTATCTGATg                            >  1:3687‑M2/31‑50 (MQ=255)
                     taagcacgaactcagccagaacgacaaaAGGCTATCAACTATCTGATGCa                          >  1:2616‑M2/29‑50 (MQ=255)
                       agcacgaactcagccagaacgacaaaAGGCTATCAACTATCTGATGCAAt                        >  1:3955‑M2/27‑50 (MQ=255)
                       agcacgaactcagccagaacgacaaaAGGCTATCAACTATCTGATGCAAt                        >  1:2729‑M2/27‑50 (MQ=255)
                          acgaactcagccagaacgacaaaAGGCTATCAACTATCTGATGCAATTTg                     <  1:2537‑M2/27‑1 (MQ=255)
                           cgaactcagccagaacgacaaaAGGCTATCAACTATCTGATGCAATTTGc                    >  1:2909‑M2/23‑50 (MQ=255)
                             aactcagccagaacgacaaaAGGCTATCAACTATCTGATGCAATTTGcac                  >  1:4610‑M2/21‑50 (MQ=255)
                               ctcagccagaacgacaaaAGGCTATCAACTATCTGATGCAATTTGcacac                >  1:4258‑M2/19‑50 (MQ=255)
                               ctcagccagaacgacaaaAGGCTATCAACTATCTGATGCAATTAGcacac                >  1:3221‑M2/19‑50 (MQ=255)
                                tcagccagaacgacaaaAGGCTATCAACTATCTGATGCAATTTGcacaca               >  1:4745‑M2/18‑50 (MQ=255)
                                     cagaacgacaaaAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTa          >  1:3719‑M2/13‑50 (MQ=255)
                                      agaacgacaaaAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTAt         >  1:2144‑M2/12‑50 (MQ=255)
                                          cgacaaaAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCggg     >  1:4253‑M2/8‑50 (MQ=255)
                                          cgacaaaAGGCTATCAACTATCTGATGCAATTTGCACACAAAGTATCggg     >  1:2330‑M2/8‑50 (MQ=255)
                                             caaaAGGCTATACAACTATCTGATGCAATTTGCACACAAGGTATCGGGGa   <  1:916‑M2/46‑1 (MQ=255)
                                             caaaAGGCTATCAACTATCTGATGCAATTTGCACACAAGGGATCGGGGaa  >  1:4603‑M2/5‑50 (MQ=255)
                                                 |                                              
ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA  >  NC_001416/44030‑44124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: