Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_001416 | 44,075 | (CAAA)2→1 | coding (190‑193/624 nt) | Q → | late gene regulator |
Missing coverage evidence... | ||||||||||
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seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_001416 | 44075 | 44078 | 4 | 28 [0] | [0] 27 | Q | late gene regulator |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 44074 | 0 (0.000) | 25 (1.110) | 20/88 | 0.0 | 100% | coding (189/624 nt) | Q | late gene regulator |
? | NC_001416 | 44079 = | 0 (0.000) | coding (194/624 nt) | Q | late gene regulator |
ATTCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_001416/44023‑44074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA > NC_001416/44079‑44124 ATTCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCGAGAACGAC > 1:891/1‑50 TCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAA > 1:4389/1‑50 CGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAA < 1:4433/50‑1 GGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGAGAAAAG > 1:1245/1‑50 ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCT < 1:1353/50‑1 ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCT < 1:3579/50‑1 GCTGCATTCTGCGGTAA‑CACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CA > 1:1880/1‑50 CATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACT < 1:1034/50‑1 CATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACT > 1:4699/1‑50 ATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTA > 1:3706/1‑50 TTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTAT > 1:2441/1‑50 TCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATC > 1:1581/1‑50 tGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATG > 1:3450/2‑50 GGTAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATG > 1:3687/1‑50 TAAGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCA > 1:2616/1‑50 AGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAAT > 1:2729/1‑50 AGCACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAAT > 1:3955/1‑50 ACGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTTG < 1:2537/50‑1 CGAACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGC > 1:2909/1‑50 AACTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCAC > 1:4610/1‑50 CTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACAC > 1:4258/1‑50 CTCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTAGCACAC > 1:3221/1‑50 TCAGCC‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACA > 1:4745/1‑50 C‑AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTA > 1:3719/1‑50 AGAACGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTAT > 1:2144/1‑50 CGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTATCGGG > 1:4253/1‑50 CGACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAAGTATCGGG > 1:2330/1‑50 CAAAAGGCTATACAACTATCTGATGCAATTTGCACACAAGGTATCGGGGA < 1:916/50‑1 CAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGGATCGGGGAA > 1:4603/1‑50 ATTCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCC‑AGAACGACAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_001416/44023‑44074 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaaaAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA > NC_001416/44079‑44124 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |