Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_001416 41,405 (GCG)2→5 coding (325/873 nt) NinC → NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 41398 =1 (0.040)27 (1.100)
+C
22/96 0.0 91.7% coding (318/873 nt) NinC NinC protein
?NC_001416 = 41405 4 (0.160)coding (325/873 nt) NinC NinC protein

CCATTTATCGATATGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAATACTGTG  >  NC_001416/41357‑41453
                                                                                                   
ccATTTATCGATATGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGg                                                  >  1:2204‑M2/1‑49 (MQ=255)
  aTTTATCGATATGGTAACAGAAATATGGCACTCCATACGTCGGCGGCGgc                                                 <  1:577‑M2/50‑3 (MQ=255)
    atggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGtt                                               <  1:1762‑M1/12‑1 (MQ=255)
     tggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTc                                              <  1:4215‑M1/13‑1 (MQ=255)
     tggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTc                                              <  1:3436‑M1/13‑1 (MQ=255)
       gtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTg                                            >  1:2105‑M1/36‑50 (MQ=255)
        taaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGc                                           <  1:2280‑M1/16‑1 (MQ=255)
        gtaaagaaatatggcactcatacgtcggcggcggCGGCGGCGCGTTCTGc                                           <  1:1192‑M1/16‑1 (MQ=255)
        gtaaagaaatatggcactcatacgtcggcggcggCGGCGGCGCGTTCTGc                                           >  1:1284‑M1/35‑50 (MQ=255)
         aaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCa                                          <  1:84‑M1/17‑1 (MQ=255)
            atGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgtt                                      <  1:1762‑M2/50‑14 (MQ=255)
             tGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttc                                     <  1:3436‑M2/50‑15 (MQ=255)
             tGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttc                                     <  1:4215‑M2/50‑15 (MQ=255)
              aatatgacactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGAc                                    >  1:4437‑M1/29‑50 (MQ=255)
               gTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctg                                   >  1:2105‑M2/1‑34 (MQ=255)
               gTAAAGAAATATGGCACTCATACGTCGGCGGCGgcggcggcgcgttctgc                                  >  1:1284‑M2/1‑33 (MQ=255)
               gTAAAGAAATATGGCACTCATACGTCGGCGGCGgcggcggcgcgttctgc                                  <  1:1192‑M2/50‑18 (MQ=255)
               ctatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACa                                   <  1:942‑M1/23‑1 (MQ=255)
               atagggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACa                                   >  1:1156‑M1/28‑50 (MQ=255)
                tatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAg                                  <  1:1703‑M1/24‑1 (MQ=255)
                tAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgc                                  <  1:2280‑M2/50‑18 (MQ=255)
                 aaaGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgca                                 <  1:84‑M2/50‑19 (MQ=255)
                  tggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGAt                                <  1:2014‑M1/26‑1 (MQ=255)
                   ggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGAtt                               <  1:3386‑M1/27‑1 (MQ=255)
                     cactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTaa                             <  1:3895‑M1/29‑1 (MQ=255)
                       aaTATGACACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgac                            >  1:4437‑M2/1‑27 (MQ=255)
                        ctatgGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgaca                           <  1:942‑M2/49‑25 (MQ=255)
                        atagGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgaca                           >  1:1156‑M2/1‑26 (MQ=255)
                         tatGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacag                          <  1:1703‑M2/50‑26 (MQ=255)
                         ccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGGACAGATTAAAAc                          <  1:2951‑M1/33‑1 (MQ=255)
                           tGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagat                        <  1:2014‑M2/50‑28 (MQ=255)
                           atacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAaaacacg                       <  1:1266‑M1/35‑4 (MQ=255)
                           atacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCg                       <  1:4410‑M1/35‑1 (MQ=255)
                            ggCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagatt                       <  1:3386‑M2/50‑29 (MQ=255)
                             acgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGtt                     <  1:4557‑M1/37‑1 (MQ=255)
                              gttcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTc                    >  1:3911‑M1/13‑50 (MQ=255)
                              cgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTc                    >  1:668‑M1/13‑50 (MQ=255)
                              cgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTc                    <  1:649‑M1/38‑1 (MQ=255)
                              cACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaa                     <  1:3895‑M2/50‑31 (MQ=255)
                               gttggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTcc                   >  1:4617‑M1/12‑50 (MQ=255)
                                  ccATACGTCGGCGGCGgcggcggcgcgttctgcactggacagattaaaac                 <  1:2951‑M2/50‑35 (MQ=255)
                                   gcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTc               <  1:4144‑M1/43‑1 (MQ=255)
                                   gcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTc               <  1:3777‑M1/43‑1 (MQ=255)
                                    cggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCa              <  1:2561‑M1/44‑1 (MQ=255)
                                    aTACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcg               <  1:4410‑M2/50‑37 (MQ=255)
                                    aTACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaacacg               <  1:1266‑M2/50‑37 (MQ=255)
                                      aCGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgtt             <  1:4557‑M2/50‑39 (MQ=255)
                                       gttcgGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc            >  1:3911‑M2/3‑11 (MQ=255)
                                       cGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc            <  1:649‑M2/50‑40 (MQ=255)
                                       cGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc            >  1:668‑M2/1‑11 (MQ=255)
                                        gTTGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttcc           >  1:4617‑M2/1‑10 (MQ=255)
                                         gCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCaaa         >  1:4791‑M1/2‑50 (MQ=255)
                                           ggcggcGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCCCAAATAc      <  1:2210/50‑1 (MQ=255)
                                            gcggcggcggcggcgcgttctgcactgacagattaaaactcgttcccttc       <  1:3777‑M2/50‑45 (MQ=255)
                                            gcggcggcggcggcgcgttctgcactgacagattaaaactcgttcccttc       <  1:4144‑M2/50‑45 (MQ=255)
                                             cggcggcggcggcgcgttctgcactgacagattaaaactcgttcccttca      <  1:2561‑M2/50‑46 (MQ=255)
                                             cggcgCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAATACt     >  1:1369/1‑50 (MQ=255)
                                               gcgcATTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAATACtgt   <  1:2915/50‑1 (MQ=255)
                                                cgcgTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAATACtgtg  <  1:845/50‑1 (MQ=255)
                                                                                                   
CCATTTATCGATATGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAATACTGTG  >  NC_001416/41357‑41453

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: