Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_001416 | 44,075 | (CAAA)2→1 | coding (190‑193/624 nt) | Q → | late gene regulator |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_001416 | 44075 | 44078 | 4 | 28 [0] | [0] 27 | Q | late gene regulator |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 44074 | 0 (0.000) | 25 (1.110) | 20/88 | 0.0 | 100% | coding (189/624 nt) | Q | late gene regulator |
? | NC_001416 | 44079 = | 0 (0.000) | coding (194/624 nt) | Q | late gene regulator |
ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA > NC_001416/44030‑44124 | cggtatggctgcattctgcggtaagcacgaactcagccagaacgacaaaa < 1:4433‑M2/1‑1 (MQ=255) ggtatggctgcattctgcggtaagcacgaactcagccagaacgagaaaAg > 1:1245‑M2/49‑50 (MQ=255) atggctgcattctgcggtaagcacgaactcagccagaacgacaaaAGGCt < 1:3579‑M2/5‑1 (MQ=255) atggctgcattctgcggtaagcacgaactcagccagaacgacaaaAGGCt < 1:1353‑M2/5‑1 (MQ=255) gctgcattctgcggtaacacgaactcagccagaacgacaaaAGGCTAT‑Ca > 1:1880‑M2/42‑50 (MQ=255) cattctgcggtaagcacgaactcagccagaacgacaaaAGGCTAT‑CAACt < 1:1034‑M2/12‑1 (MQ=255) cattctgcggtaagcacgaactcagccagaacgacaaaAGGCTAT‑CAACt > 1:4699‑M2/39‑50 (MQ=255) attctgcggtaagcacgaactcagccagaacgacaaaAGGCTAT‑CAACTa > 1:3706‑M2/38‑50 (MQ=255) ttctgcggtaagcacgaactcagccagaacgacaaaAGGCTAT‑CAACTAt > 1:2441‑M2/37‑50 (MQ=255) tctgcggtaagcacgaactcagccagaacgacaaaAGGCTAT‑CAACTATc > 1:1581‑M2/36‑50 (MQ=255) tgtaagcacgaactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATg > 1:3450‑M2/31‑50 (MQ=255) ggtaagcacgaactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATg > 1:3687‑M2/31‑50 (MQ=255) taagcacgaactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCa > 1:2616‑M2/29‑50 (MQ=255) agcacgaactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAAt > 1:3955‑M2/27‑50 (MQ=255) agcacgaactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAAt > 1:2729‑M2/27‑50 (MQ=255) acgaactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTTg < 1:2537‑M2/27‑1 (MQ=255) cgaactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGc > 1:2909‑M2/23‑50 (MQ=255) aactcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGcac > 1:4610‑M2/21‑50 (MQ=255) ctcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGcacac > 1:4258‑M2/19‑50 (MQ=255) ctcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTAGcacac > 1:3221‑M2/19‑50 (MQ=255) tcagccagaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGcacaca > 1:4745‑M2/18‑50 (MQ=255) cagaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTa > 1:3719‑M2/13‑50 (MQ=255) agaacgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTAt > 1:2144‑M2/12‑50 (MQ=255) cgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTATCggg > 1:4253‑M2/8‑50 (MQ=255) cgacaaaAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAAGTATCggg > 1:2330‑M2/8‑50 (MQ=255) caaaAGGCTATACAACTATCTGATGCAATTTGCACACAAGGTATCGGGGa < 1:916‑M2/46‑1 (MQ=255) caaaAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGGATCGGGGaa > 1:4603‑M2/5‑50 (MQ=255) | ATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTAT‑CAACTATCTGATGCAATTTGCACACAAGGTATCGGGGAA > NC_001416/44030‑44124 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |