Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_001416 41,405 (GCG)2→5 coding (325/873 nt) NinC → NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 41398 =1 (0.040)27 (1.100)
+C
22/96 0.0 91.7% coding (318/873 nt) NinC NinC protein
?NC_001416 = 41405 4 (0.160)coding (325/873 nt) NinC NinC protein

TCTGAAGCCATTTATCGATATGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAA  >  NC_001416/41350‑41446
                                                 |                                                 
atttatcgatatggtaacagaaatatggcactccatacgtcggcggcggc                                                   <  1:577‑M1/1‑1 (MQ=255)
  tGAAGCCATTTATCGATATGGTAAAAAATATGGCACTCCATACGTcggcg                                               >  1:2279/1‑50 (MQ=255)
       ccATTTATCGATATGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGg                                           >  1:2204‑M2/1‑49 (MQ=255)
         aTTTATCGATATGGTAACAGAAATATGGCACTCCATACGTCGGCGGCGgc                                          <  1:577‑M2/50‑3 (MQ=255)
           atggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGtt                                        <  1:1762‑M1/12‑1 (MQ=255)
            tggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTc                                       <  1:4215‑M1/13‑1 (MQ=255)
            tggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTc                                       <  1:3436‑M1/13‑1 (MQ=255)
              gtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTg                                     >  1:2105‑M1/36‑50 (MQ=255)
               taaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGc                                    <  1:2280‑M1/16‑1 (MQ=255)
               gtaaagaaatatggcactcatacgtcggcggcggCGGCGGCGCGTTCTGc                                    >  1:1284‑M1/35‑50 (MQ=255)
               gtaaagaaatatggcactcatacgtcggcggcggCGGCGGCGCGTTCTGc                                    <  1:1192‑M1/16‑1 (MQ=255)
                aaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCa                                   <  1:84‑M1/17‑1 (MQ=255)
                   atGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgtt                               <  1:1762‑M2/50‑14 (MQ=255)
                    tGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttc                              <  1:4215‑M2/50‑15 (MQ=255)
                    tGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttc                              <  1:3436‑M2/50‑15 (MQ=255)
                     aatatgacactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGAc                             >  1:4437‑M1/29‑50 (MQ=255)
                      gTAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctg                            >  1:2105‑M2/1‑34 (MQ=255)
                      gTAAAGAAATATGGCACTCATACGTCGGCGGCGgcggcggcgcgttctgc                           <  1:1192‑M2/50‑18 (MQ=255)
                      gTAAAGAAATATGGCACTCATACGTCGGCGGCGgcggcggcgcgttctgc                           >  1:1284‑M2/1‑33 (MQ=255)
                      ctatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACa                            <  1:942‑M1/23‑1 (MQ=255)
                      atagggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACa                            >  1:1156‑M1/28‑50 (MQ=255)
                       tatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAg                           <  1:1703‑M1/24‑1 (MQ=255)
                       tAAAGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgc                           <  1:2280‑M2/50‑18 (MQ=255)
                        aaaGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgca                          <  1:84‑M2/50‑19 (MQ=255)
                         tggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGAt                         <  1:2014‑M1/26‑1 (MQ=255)
                          ggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGAtt                        <  1:3386‑M1/27‑1 (MQ=255)
                            cactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTaa                      <  1:3895‑M1/29‑1 (MQ=255)
                              aaTATGACACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgac                     >  1:4437‑M2/1‑27 (MQ=255)
                               ctatgGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgaca                    <  1:942‑M2/49‑25 (MQ=255)
                               atagGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgaca                    >  1:1156‑M2/1‑26 (MQ=255)
                                tatGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacag                   <  1:1703‑M2/50‑26 (MQ=255)
                                ccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGGACAGATTAAAAc                   <  1:2951‑M1/33‑1 (MQ=255)
                                  tGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagat                 <  1:2014‑M2/50‑28 (MQ=255)
                                  atacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAaaacacg                <  1:1266‑M1/35‑4 (MQ=255)
                                  atacgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCg                <  1:4410‑M1/35‑1 (MQ=255)
                                   ggCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagatt                <  1:3386‑M2/50‑29 (MQ=255)
                                    acgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGtt              <  1:4557‑M1/37‑1 (MQ=255)
                                     gttcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTc             >  1:3911‑M1/13‑50 (MQ=255)
                                     cgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTc             >  1:668‑M1/13‑50 (MQ=255)
                                     cgtcggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTc             <  1:649‑M1/38‑1 (MQ=255)
                                     cACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaa              <  1:3895‑M2/50‑31 (MQ=255)
                                      gttggcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTcc            >  1:4617‑M1/12‑50 (MQ=255)
                                         ccATACGTCGGCGGCGgcggcggcgcgttctgcactggacagattaaaac          <  1:2951‑M2/50‑35 (MQ=255)
                                          gcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTc        <  1:3777‑M1/43‑1 (MQ=255)
                                          gcggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTc        <  1:4144‑M1/43‑1 (MQ=255)
                                           cggcggCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCa       <  1:2561‑M1/44‑1 (MQ=255)
                                           aTACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcg        <  1:4410‑M2/50‑37 (MQ=255)
                                           aTACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaacacg        <  1:1266‑M2/50‑37 (MQ=255)
                                             aCGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgtt      <  1:4557‑M2/50‑39 (MQ=255)
                                              gttcgGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc     >  1:3911‑M2/3‑11 (MQ=255)
                                              cGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc     >  1:668‑M2/1‑11 (MQ=255)
                                              cGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc     <  1:649‑M2/50‑40 (MQ=255)
                                               gTTGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttcc    >  1:4617‑M2/1‑10 (MQ=255)
                                                gCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCaaa  >  1:4791‑M1/2‑50 (MQ=255)
                                                 |                                                 
TCTGAAGCCATTTATCGATATGGTAAAGAAATATGGCACTCCATACGTCGGCGGCGCGTTCTGCACTGACAGATTAAAACTCGTTCCCTTCACCAAA  >  NC_001416/41350‑41446

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.