Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_001416 | 41,601 | (AAC)2→1 | coding (521‑523/873 nt) | NinC → | NinC protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_001416 | 41601 | 41603 | 3 | 29 [0] | [0] 28 | NinC | NinC protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 41600 | 0 (0.000) | 23 (1.000) | 19/90 | 0.0 | 100% | coding (520/873 nt) | NinC | NinC protein |
? | NC_001416 | 41604 = | 0 (0.000) | coding (524/873 nt) | NinC | NinC protein |
TCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAT > NC_001416/41558‑41652 | ctgtcagactttgagaaggaagatatcctcgcatggtggaagcaacCAtt > 1:2919‑M2/47‑50 (MQ=255) gtcagactttgagaaggaagatatcctcgcatggtggaagcaacCATTCg > 1:2683‑M2/45‑50 (MQ=255) cagactttggagaaggaagatatcctcgcatggtggaagcaacCATTCGa < 1:2944‑M2/7‑1 (MQ=255) actttgagaaggaagatatcctcgcatggtggaagcaacCATTCGATTTg > 1:1852‑M2/40‑50 (MQ=255) ctttgagaaggaagatatcctcgcatggtggaagcaacCATTCGATTTGc < 1:1426‑M2/12‑1 (MQ=255) ctttgagaaggaagatatcctcgcatggtggaagcaacCATTCGATTTGc > 1:3385‑M2/39‑50 (MQ=255) aggaagatatcctcgcatggtggaagcaacCATTCGATTTGCAAATACCg < 1:4972‑M2/20‑1 (MQ=255) ggtagatatcctcgcatggtggaagcaacCATTCGATTTGCAAATACCgg < 1:3597‑M2/21‑1 (MQ=255) agatatcctcgcatggtggaagcaacCATTCGATTTGCAAATACCGG‑AAc < 1:2288‑M2/24‑1 (MQ=255) gataccctcgcatggtggaagcaacCATTCGATTTGCAAATACCGG‑AACa < 1:4834‑M2/25‑1 (MQ=255) atatcctcgcatggtggaagcaacCATTCGATTTGCAAATACTGG‑AACAt > 1:1043‑M2/25‑50 (MQ=255) atatcctcgcatgtggaagcaacCATTCGATTTGCAAATA‑CGG‑AACAtct > 1:604‑M2/24‑50 (MQ=255) atcctcgcatggtggaagcaacCATTCGATTTGCAAATACCGG‑AACAtct > 1:3580‑M2/23‑50 (MQ=255) ctcgcatggtggaagcaacCATTCGATTTGCAAATACCGG‑AACATCTCgg > 1:3982‑M2/20‑50 (MQ=255) cgcatggtggaagcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTa > 1:1076‑M2/18‑50 (MQ=255) gcatggtggaagcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTaa > 1:4349‑M2/17‑50 (MQ=255) gcatggtggaagcaacCATTCGATTTGCAAATACCGG‑AAAATCTCGGTaa > 1:419‑M2/17‑50 (MQ=255) atggtggaagcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACt < 1:648‑M2/36‑1 (MQ=255) tggtggcagcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTg < 1:2513‑M2/37‑1 (MQ=255) tggtggaagcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTg < 1:3874‑M2/37‑1 (MQ=255) gaagcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCatat > 1:1257‑M2/9‑50 (MQ=255) aagcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCGTAtt > 1:4347‑M2/8‑50 (MQ=255) agcaacCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTc > 1:901‑M2/7‑50 (MQ=255) caacCATTCGATTTGCAAATACCGGAAACATCTCGGTAACTGCATATTCt > 1:1668‑M2/5‑50 (MQ=255) caacCATTCGATTTGCAAATACCGG‑AACGTCTCGGTAACTGCATATTCTg < 1:2162‑M2/46‑1 (MQ=255) acCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCa > 1:3156‑M2/3‑50 (MQ=255) cCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAt < 1:4063‑M2/49‑1 (MQ=255) cCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAt < 1:849‑M2/49‑1 (MQ=255) | TCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGG‑AACATCTCGGTAACTGCATATTCTGCAT > NC_001416/41558‑41652 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |