Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_001416 | 44,075 | (CAAA)2→1 | coding (190‑193/624 nt) | Q → | late gene regulator |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_001416 | 44075 | 44078 | 4 | 28 [0] | [0] 27 | Q | late gene regulator |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 44074 | 0 (0.000) | 25 (1.110) | 20/88 | 0.0 | 100% | coding (189/624 nt) | Q | late gene regulator |
? | NC_001416 | 44079 = | 0 (0.000) | coding (194/624 nt) | Q | late gene regulator |
TCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGG > NC_001416/44025‑44120 | tCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAA > 1:4389‑M1/1‑50 (MQ=255) cGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAa < 1:4433‑M1/50‑2 (MQ=255) ggTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGAGAAAag > 1:1245‑M1/1‑48 (MQ=255) aTGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggct < 1:3579‑M1/50‑6 (MQ=255) aTGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggct < 1:1353‑M1/50‑6 (MQ=255) gCTGCATTCTGCGGTAA‑CACGAACTCAGCCAGAACGACAAAaggctatca > 1:1880‑M1/1‑41 (MQ=255) cATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaact < 1:1034‑M1/50‑13 (MQ=255) cATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaact > 1:4699‑M1/1‑38 (MQ=255) aTTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaacta > 1:3706‑M1/1‑37 (MQ=255) ttCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactat > 1:2441‑M1/1‑36 (MQ=255) tCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatc > 1:1581‑M1/1‑35 (MQ=255) tgtAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatg > 1:3450‑M1/2‑30 (MQ=255) ggTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatg > 1:3687‑M1/1‑30 (MQ=255) tAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgca > 1:2616‑M1/1‑28 (MQ=255) aGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaat > 1:3955‑M1/1‑26 (MQ=255) aGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaat > 1:2729‑M1/1‑26 (MQ=255) aCGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttg < 1:2537‑M1/50‑28 (MQ=255) cGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgc > 1:2909‑M1/1‑22 (MQ=255) aaCTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgcac > 1:4610‑M1/1‑20 (MQ=255) cTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgcacac > 1:4258‑M1/1‑18 (MQ=255) cTCAGCCAGAACGACAAAaggctatcaactatctgatgcaattagcacac > 1:3221‑M1/1‑18 (MQ=255) tCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgcacaca > 1:4745‑M1/1‑17 (MQ=255) cAGAACGACAAAaggctatcaactatctgatgcaatttgcacacaaggta > 1:3719‑M1/1‑12 (MQ=255) aGAACGACAAAaggctatcaactatctgatgcaatttgcacacaaggtat > 1:2144‑M1/1‑11 (MQ=255) cGACAAAaggctatcaactatctgatgcaatttgcacacaaggtatcggg > 1:4253‑M1/1‑7 (MQ=255) cGACAAAaggctatcaactatctgatgcaatttgcacacaaagtatcggg > 1:2330‑M1/1‑7 (MQ=255) cAAAaggctatcaactatctgatgcaatttgcacacaagggatcggggaa > 1:4603‑M1/1‑4 (MQ=255) cAAAaggctatacaactatctgatgcaatttgcacacaaggtatcgggga < 1:916‑M1/50‑47 (MQ=255) | TCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGG > NC_001416/44025‑44120 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |