Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_001416 41,601 (AAC)2→1 coding (521‑523/873 nt) NinC → NinC protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_001416 41601 41603 3 29 [0] [0] 28 NinC NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 416000 (0.000)23 (1.000) 19/90 0.0 100% coding (520/873 nt) NinC NinC protein
?NC_001416 41604 = 0 (0.000)coding (524/873 nt) NinC NinC protein

TCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAT  >  NC_001416/41558‑41652
                                              |                                                 
ctgtcagactttgagaaggaagatatcctcgcatggtggaagcaacCAtt                                                >  1:2919‑M2/47‑50 (MQ=255)
  gtcagactttgagaaggaagatatcctcgcatggtggaagcaacCATTCg                                              >  1:2683‑M2/45‑50 (MQ=255)
   cagactttggagaaggaagatatcctcgcatggtggaagcaacCATTCGa                                             <  1:2944‑M2/7‑1 (MQ=255)
       actttgagaaggaagatatcctcgcatggtggaagcaacCATTCGATTTg                                         >  1:1852‑M2/40‑50 (MQ=255)
        ctttgagaaggaagatatcctcgcatggtggaagcaacCATTCGATTTGc                                        <  1:1426‑M2/12‑1 (MQ=255)
        ctttgagaaggaagatatcctcgcatggtggaagcaacCATTCGATTTGc                                        >  1:3385‑M2/39‑50 (MQ=255)
                aggaagatatcctcgcatggtggaagcaacCATTCGATTTGCAAATACCg                                <  1:4972‑M2/20‑1 (MQ=255)
                 ggtagatatcctcgcatggtggaagcaacCATTCGATTTGCAAATACCgg                               <  1:3597‑M2/21‑1 (MQ=255)
                    agatatcctcgcatggtggaagcaacCATTCGATTTGCAAATACCGGAAc                           <  1:2288‑M2/24‑1 (MQ=255)
                     gataccctcgcatggtggaagcaacCATTCGATTTGCAAATACCGGAACa                          <  1:4834‑M2/25‑1 (MQ=255)
                      atatcctcgcatggtggaagcaacCATTCGATTTGCAAATACTGGAACAt                         >  1:1043‑M2/25‑50 (MQ=255)
                       atatcctcgcatgtggaagcaacCATTCGATTTGCAAATACGGAACAtct                       >  1:604‑M2/24‑50 (MQ=255)
                        atcctcgcatggtggaagcaacCATTCGATTTGCAAATACCGGAACAtct                       >  1:3580‑M2/23‑50 (MQ=255)
                           ctcgcatggtggaagcaacCATTCGATTTGCAAATACCGGAACATCTCgg                    >  1:3982‑M2/20‑50 (MQ=255)
                             cgcatggtggaagcaacCATTCGATTTGCAAATACCGGAACATCTCGGTa                  >  1:1076‑M2/18‑50 (MQ=255)
                              gcatggtggaagcaacCATTCGATTTGCAAATACCGGAACATCTCGGTaa                 >  1:4349‑M2/17‑50 (MQ=255)
                              gcatggtggaagcaacCATTCGATTTGCAAATACCGGAAAATCTCGGTaa                 >  1:419‑M2/17‑50 (MQ=255)
                                atggtggaagcaacCATTCGATTTGCAAATACCGGAACATCTCGGTAACt               <  1:648‑M2/36‑1 (MQ=255)
                                 tggtggcagcaacCATTCGATTTGCAAATACCGGAACATCTCGGTAACTg              <  1:2513‑M2/37‑1 (MQ=255)
                                 tggtggaagcaacCATTCGATTTGCAAATACCGGAACATCTCGGTAACTg              <  1:3874‑M2/37‑1 (MQ=255)
                                      gaagcaacCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCatat         >  1:1257‑M2/9‑50 (MQ=255)
                                       aagcaacCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCGTAtt        >  1:4347‑M2/8‑50 (MQ=255)
                                        agcaacCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTc       >  1:901‑M2/7‑50 (MQ=255)
                                          caacCATTCGATTTGCAAATACCGGAAACATCTCGGTAACTGCATATTCt      >  1:1668‑M2/5‑50 (MQ=255)
                                          caacCATTCGATTTGCAAATACCGGAACGTCTCGGTAACTGCATATTCTg     <  1:2162‑M2/46‑1 (MQ=255)
                                            acCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCa   >  1:3156‑M2/3‑50 (MQ=255)
                                             cCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAt  <  1:4063‑M2/49‑1 (MQ=255)
                                             cCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAt  <  1:849‑M2/49‑1 (MQ=255)
                                              |                                                 
TCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAT  >  NC_001416/41558‑41652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: