Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC | NC_001416 | 41,405 | (GCG)2→5 | coding (325/873 nt) | NinC → | NinC protein |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | 41398 = | 1 (0.040) | 27 (1.100) +C |
22/96 | 0.0 | 91.7% | coding (318/873 nt) | NinC | NinC protein |
? | NC_001416 | = 41405 | 4 (0.160) | coding (325/873 nt) | NinC | NinC protein |
TCTGAAGCCATTTATCGATATGGTAA‑AGAAATATGGCACTCCATACGTCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTCCCTTCACCAAA > NC_001416/41350‑41446 | atttatcgatatggtaacagaaatatggcactccatacgtcggcggcggc < 1:577‑M1/1‑1 (MQ=255) tGAAGCCATTTATCGATATGGTAA‑A‑AAATATGGCACTCCATACGTcggcg > 1:2279/1‑50 (MQ=255) ccATTTATCGATATGGTAA‑AGAAATATGGCACTCCATACGTCGGCGGCGg > 1:2204‑M2/1‑49 (MQ=255) aTTTATCGATATGGTAACAGAAATATGGCACTCCATACGTCGGCGGCGgc < 1:577‑M2/50‑3 (MQ=255) atggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGtt < 1:1762‑M1/12‑1 (MQ=255) tggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTc < 1:4215‑M1/13‑1 (MQ=255) tggtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTc < 1:3436‑M1/13‑1 (MQ=255) gtaaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTg > 1:2105‑M1/36‑50 (MQ=255) taaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGc < 1:2280‑M1/16‑1 (MQ=255) gtaaagaaatatggcactcatacgtcggcggcggCGGCGGCGCGTTCTGc > 1:1284‑M1/35‑50 (MQ=255) gtaaagaaatatggcactcatacgtcggcggcggCGGCGGCGCGTTCTGc < 1:1192‑M1/16‑1 (MQ=255) aaagaaatatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCa < 1:84‑M1/17‑1 (MQ=255) atGGTAA‑AGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgtt < 1:1762‑M2/50‑14 (MQ=255) tGGTAA‑AGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttc < 1:4215‑M2/50‑15 (MQ=255) tGGTAA‑AGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttc < 1:3436‑M2/50‑15 (MQ=255) aatatgacactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑Ac > 1:4437‑M1/29‑50 (MQ=255) gTAA‑AGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctg > 1:2105‑M2/1‑34 (MQ=255) gTAA‑AGAAATATGGCACTC‑ATACGTCGGCGGCGgcggcggcgcgttctgc < 1:1192‑M2/50‑18 (MQ=255) gTAA‑AGAAATATGGCACTC‑ATACGTCGGCGGCGgcggcggcgcgttctgc > 1:1284‑M2/1‑33 (MQ=255) ctatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACa < 1:942‑M1/23‑1 (MQ=255) atagggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACa > 1:1156‑M1/28‑50 (MQ=255) tatggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAg < 1:1703‑M1/24‑1 (MQ=255) tAA‑AGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgc < 1:2280‑M2/50‑18 (MQ=255) aa‑aGAAATATGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgca < 1:84‑M2/50‑19 (MQ=255) tggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGAt < 1:2014‑M1/26‑1 (MQ=255) ggcactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGAtt < 1:3386‑M1/27‑1 (MQ=255) cactccatacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTaa < 1:3895‑M1/29‑1 (MQ=255) aaTATGACACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgac > 1:4437‑M2/1‑27 (MQ=255) ctatgGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgaca < 1:942‑M2/49‑25 (MQ=255) atagGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgaca > 1:1156‑M2/1‑26 (MQ=255) tatGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacag < 1:1703‑M2/50‑26 (MQ=255) ccatacgtcggcggcggCGGCGGCGCGTTCTGCACTGGACAGATTAAAAc < 1:2951‑M1/33‑1 (MQ=255) tGGCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagat < 1:2014‑M2/50‑28 (MQ=255) atacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAaaacacg < 1:1266‑M1/35‑4 (MQ=255) atacgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCg < 1:4410‑M1/35‑1 (MQ=255) ggCACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagatt < 1:3386‑M2/50‑29 (MQ=255) acgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGtt < 1:4557‑M1/37‑1 (MQ=255) gttcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTc > 1:3911‑M1/13‑50 (MQ=255) cgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTc > 1:668‑M1/13‑50 (MQ=255) cgtcggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTc < 1:649‑M1/38‑1 (MQ=255) cACTCCATACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaa < 1:3895‑M2/50‑31 (MQ=255) gttggcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTcc > 1:4617‑M1/12‑50 (MQ=255) ccATACGTCGGCGGCGgcggcggcgcgttctgcactggacagattaaaac < 1:2951‑M2/50‑35 (MQ=255) gcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTCCCTTc < 1:3777‑M1/43‑1 (MQ=255) gcggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTCCCTTc < 1:4144‑M1/43‑1 (MQ=255) cggcggCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTCCCTTCa < 1:2561‑M1/44‑1 (MQ=255) aTACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcg < 1:4410‑M2/50‑37 (MQ=255) aTACGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaacacg < 1:1266‑M2/50‑37 (MQ=255) aCGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgtt < 1:4557‑M2/50‑39 (MQ=255) gttcgGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc > 1:3911‑M2/3‑11 (MQ=255) cGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc > 1:668‑M2/1‑11 (MQ=255) cGTCGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttc < 1:649‑M2/50‑40 (MQ=255) gTTGGCGGCGgcggcggcgcgttctgcactgacagattaaaactcgttcc > 1:4617‑M2/1‑10 (MQ=255) gCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTCCCTTCACCaaa > 1:4791‑M1/2‑50 (MQ=255) | TCTGAAGCCATTTATCGATATGGTAA‑AGAAATATGGCACTCCATACGTCGGCGGCGCGTTCTGCACTG‑ACAGATTAAAACTCGTTCCCTTCACCAAA > NC_001416/41350‑41446 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |