Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC | NC_001416 | 41,405 | (GCG)2→5 | coding (325/873 nt) | NinC → | NinC protein |
New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | 41398 = | 1 (0.040) | 27 (1.100) +C |
22/96 | 0.0 | 91.7% | coding (318/873 nt) | NinC | NinC protein |
? | NC_001416 | = 41405 | 4 (0.160) | coding (325/873 nt) | NinC | NinC protein |
TTTGGTGAAGGGAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_001416/41446‑41398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCCGACGTATGGAGTGCCATATTTCT‑TTACCATATCGATAAATGG < NC_001416/41405‑41357 | TTTGGTGAAGGGAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGC > 1:4791/1‑50 TGAAGGGAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCG < 1:2561/50‑1 GAAGGGAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGC < 1:4144/50‑1 GAAGGGAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGC < 1:3777/50‑1 GGAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCAAC > 1:4617/1‑50 GAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGAac > 1:3911/1‑48 GAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACG < 1:649/50‑1 GAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACG > 1:668/1‑50 AACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGT < 1:4557/50‑1 cgtGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTAT < 1:1266/47‑1 CGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTAT < 1:4410/50‑1 GTTTTAATCTGTCCAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGG < 1:2951/50‑1 TTAATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTG < 1:3895/50‑1 AATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCC < 1:3386/50‑1 ATCTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCA < 1:2014/50‑1 CTGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATA < 1:1703/50‑1 TGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCCTAT > 1:1156/1‑50 TGT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATAg < 1:942/50‑2 GT‑CAGTGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGTCATATT > 1:4437/1‑50 TGCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCT‑TT < 1:84/50‑1 GCAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCT‑TTA < 1:2280/50‑1 GCAGAACGCGCCGCCGCCGCCGCCGACGTAT‑GAGTGCCATATTTCT‑TTAC < 1:1192/50‑1 GCAGAACGCGCCGCCGCCGCCGCCGACGTAT‑GAGTGCCATATTTCT‑TTAC > 1:1284/1‑50 CAGAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCT‑TTAC > 1:2105/1‑50 GAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCT‑TTACCA < 1:3436/50‑1 GAACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCT‑TTACCA < 1:4215/50‑1 AACGCGCCGCCGCCGCCGCCGACGTATGGAGTGCCATATTTCT‑TTACCAT < 1:1762/50‑1 GCCGCCGCCGACGTATGGAGTGCCATATTTCTGTTACCATATCGATAAAT < 1:577/50‑1 CCGCCGCCGACGTATGGAGTGCCATATTTCT‑TTACCATATCGATAAATGG > 1:2204/1‑50 | TTTGGTGAAGGGAACGAGTTTTAATCTGT‑CAGTGCAGAACGCGCCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_001416/41446‑41398 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCCGACGTATGGAGTGCCATATTTCT‑TTACCATATCGATAAATGG < NC_001416/41405‑41357 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |