Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
JC | NC_001416 | 41,716 | (T)5→9 | coding (636/873 nt) | NinC → | NinC protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_001416 | = 41711 | 0 (0.000) | 30 (1.300) +TTTT |
20/80 | 0.0 | 100% | coding (631/873 nt) | NinC | NinC protein |
? | NC_001416 | 41712 = | 0 (0.000) | coding (632/873 nt) | NinC | NinC protein |
ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGAA > NC_001416/41663‑41761 | aaaaaatcggacttgcctgcaaagatgaggagggattgcagcgtgttttt < 1:3836‑M2/1‑1 (MQ=255) aaatcggacttgcctgcaaagatgaggagggattgcagcgtgtttttttt > 1:3602‑M2/47‑50 (MQ=255) aatcggacttgcctgcaaagatgaggagggattgcagcgtgttttttttt > 1:2000‑M2/46‑50 (MQ=255) tcggacttgcctgcaaagatgaggagggattgcagcgtgttttTTTTT‑aa > 1:660‑M2/44‑50 (MQ=255) ggacttgcctgcaaagatgaggagggattgcagcgtgttttTTTTT‑AATg > 1:4975‑M2/42‑50 (MQ=255) cctgcctgcaaagatgaggagggattgcagcgtgttttTTTTT‑AATGAgg > 1:1102‑M2/39‑50 (MQ=255) cctgcaaagatgaggagggattgcagcgtgttttTTTTT‑AATG‑GGtcatc < 1:2314‑M2/16‑1 (MQ=255) tgcaaagatgaggagggattgcagcgtgttttTTTTT‑AATGAGGttatca < 1:3862‑M2/18‑1 (MQ=255) gcaaagatgaggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCAc > 1:1552‑M2/32‑50 (MQ=255) caaagatgaggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCACg < 1:4917‑M2/20‑1 (MQ=255) aagatgaggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCACggg < 1:3359‑M2/22‑1 (MQ=255) aaaatgaggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCACggg < 1:4950‑M2/22‑1 (MQ=255) tatgaggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGAt < 1:2017‑M2/24‑1 (MQ=255) gatgaggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCACGGgaa > 1:160‑M2/27‑49 (MQ=255) gaggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGATccc < 1:2102‑M2/27‑1 (MQ=255) gaggagggattgcagcgtgttttTTTTT‑AATG‑GGTCATCACGGTATCCCa > 1:4736‑M2/24‑50 (MQ=255) aggagggattgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCa > 1:3880‑M2/23‑50 (MQ=255) ggagggattgaagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCAt < 1:4232‑M2/29‑1 (MQ=255) gagggattgcagcgtgttttTTTTTGAATGAGGTCATCACGGGATCCCAt > 1:3227‑M2/21‑50 (MQ=255) ggattgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCATGTGc > 1:296‑M2/18‑50 (MQ=255) attgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGt < 1:4850‑M2/35‑1 (MQ=255) attgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGt < 1:4592‑M2/35‑1 (MQ=255) ttgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTg < 1:914‑M2/36‑1 (MQ=255) tgcagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGa > 1:1707‑M2/14‑50 (MQ=255) cagcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACg < 1:3541‑M2/39‑1 (MQ=255) agcgtgttttTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACgg < 1:533‑M2/40‑1 (MQ=255) tTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGa > 1:5‑M2/2‑50 (MQ=255) ttttt‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGaa > 1:4407/1‑50 (MQ=255) | ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTT‑AATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGAA > NC_001416/41663‑41761 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |