Predicted mutation
evidence seq id position mutation annotation gene description
JC NC_001416 41,716 (T)5→9 coding (636/873 nt) NinC → NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 417110 (0.000)30 (1.300)
+TTTT
20/80 0.0 100% coding (631/873 nt) NinC NinC protein
?NC_001416 41712 = 0 (0.000)coding (632/873 nt) NinC NinC protein

ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGAA  >  NC_001416/41663‑41761
                                                 |                                                  
aaaaaatcggacttgcctgcaaagatgaggagggattgcagcgtgttttt                                                    <  1:3836‑M2/1‑1 (MQ=255)
   aaatcggacttgcctgcaaagatgaggagggattgcagcgtgtttttttt                                                 >  1:3602‑M2/47‑50 (MQ=255)
    aatcggacttgcctgcaaagatgaggagggattgcagcgtgttttttttt                                                >  1:2000‑M2/46‑50 (MQ=255)
      tcggacttgcctgcaaagatgaggagggattgcagcgtgttttTTTTTaa                                             >  1:660‑M2/44‑50 (MQ=255)
        ggacttgcctgcaaagatgaggagggattgcagcgtgttttTTTTTAATg                                           >  1:4975‑M2/42‑50 (MQ=255)
           cctgcctgcaaagatgaggagggattgcagcgtgttttTTTTTAATGAgg                                        >  1:1102‑M2/39‑50 (MQ=255)
               cctgcaaagatgaggagggattgcagcgtgttttTTTTTAATGGGtcatc                                   <  1:2314‑M2/16‑1 (MQ=255)
                 tgcaaagatgaggagggattgcagcgtgttttTTTTTAATGAGGttatca                                  <  1:3862‑M2/18‑1 (MQ=255)
                  gcaaagatgaggagggattgcagcgtgttttTTTTTAATGAGGTCATCAc                                 >  1:1552‑M2/32‑50 (MQ=255)
                   caaagatgaggagggattgcagcgtgttttTTTTTAATGAGGTCATCACg                                <  1:4917‑M2/20‑1 (MQ=255)
                     aagatgaggagggattgcagcgtgttttTTTTTAATGAGGTCATCACggg                              <  1:3359‑M2/22‑1 (MQ=255)
                     aaaatgaggagggattgcagcgtgttttTTTTTAATGAGGTCATCACggg                              <  1:4950‑M2/22‑1 (MQ=255)
                       tatgaggagggattgcagcgtgttttTTTTTAATGAGGTCATCACGGGAt                            <  1:2017‑M2/24‑1 (MQ=255)
                       gatgaggagggattgcagcgtgttttTTTTTAATGAGGTCATCACGGgaa                            >  1:160‑M2/27‑49 (MQ=255)
                          gaggagggattgcagcgtgttttTTTTTAATGAGGTCATCACGGGATccc                         <  1:2102‑M2/27‑1 (MQ=255)
                          gaggagggattgcagcgtgttttTTTTTAATGGGTCATCACGGTATCCCa                        >  1:4736‑M2/24‑50 (MQ=255)
                           aggagggattgcagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCa                        >  1:3880‑M2/23‑50 (MQ=255)
                            ggagggattgaagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCAt                       <  1:4232‑M2/29‑1 (MQ=255)
                             gagggattgcagcgtgttttTTTTTGAATGAGGTCATCACGGGATCCCAt                       >  1:3227‑M2/21‑50 (MQ=255)
                                ggattgcagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCATGTGc                   >  1:296‑M2/18‑50 (MQ=255)
                                  attgcagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCATGTGCGt                 <  1:4850‑M2/35‑1 (MQ=255)
                                  attgcagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCATGTGCGt                 <  1:4592‑M2/35‑1 (MQ=255)
                                   ttgcagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTg                <  1:914‑M2/36‑1 (MQ=255)
                                    tgcagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGa               >  1:1707‑M2/14‑50 (MQ=255)
                                      cagcgtgttttTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACg             <  1:3541‑M2/39‑1 (MQ=255)
                                       agcgtgttttTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACgg            <  1:533‑M2/40‑1 (MQ=255)
                                                tTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGa   >  1:5‑M2/2‑50 (MQ=255)
                                                 tttttAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGaa  >  1:4407/1‑50 (MQ=255)
                                                 |                                                  
ACGCAAAAAATCGGACTTGCCTGCAAAGATGAGGAGGGATTGCAGCGTGTTTTTAATGAGGTCATCACGGGATCCCATGTGCGTGACGGACATCGGGAA  >  NC_001416/41663‑41761

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.