Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_001416 41,601 (AAC)2→1 coding (521‑523/873 nt) NinC → NinC protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_001416 41601 41603 3 29 [0] [0] 28 NinC NinC protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 416000 (0.000)23 (1.000) 19/90 0.0 100% coding (520/873 nt) NinC NinC protein
?NC_001416 41604 = 0 (0.000)coding (524/873 nt) NinC NinC protein

TGCTGAACTGTCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_001416/41548‑41600
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAT  >  NC_001416/41604‑41652
                                                                                                         
TGCTGAACTGTCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGC                                                       >  1:2942/1‑50
   TGAACTGTCAGACTTGTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAA                                                     <  1:4965/50‑1
   TGAACTGTCAGACTTTGAGAAGGAAGATATTCTCGCATGGTGGAAGCAAC                                                    >  1:727/1‑50
       CTGTCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATT                                                >  1:2919/1‑50
         GTCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCG                                              >  1:2683/1‑50
           CAGACTTTGGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGA                                             <  1:2944/50‑1
              ACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTG                                         >  1:1852/1‑50
               CTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGC                                        <  1:1426/50‑1
               CTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGC                                        >  1:3385/1‑50
                         AGGAAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCG                                <  1:4972/50‑1
                          ggtAGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGG                               <  1:3597/47‑1
                             AGATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAAC                           <  1:2288/50‑1
                              GATACCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAACA                          <  1:4834/50‑1
                               ATATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACTGGAACAT                         >  1:1043/1‑50
                               ATATCCTCGCATGTGGAAGCAACCATTCGATTTGCAAATACGGAACATCT                       >  1:604/1‑50
                                 ATCCTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAACATCT                       >  1:3580/1‑50
                                    CTCGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAACATCTCGG                    >  1:3982/1‑50
                                      CGCATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTA                  >  1:1076/1‑50
                                       GCATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAA                 >  1:4349/1‑50
                                       GCATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAAAATCTCGGTAA                 >  1:419/1‑50
                                         ATGGTGGAAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACT               <  1:648/50‑1
                                          TGGTGGCAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTG              <  1:2513/50‑1
                                          TGGTGGAAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTG              <  1:3874/50‑1
                                               GAAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATAT         >  1:1257/1‑50
                                                AAGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCGTATT        >  1:4347/1‑50
                                                 AGCAACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTC       >  1:901/1‑50
                                                   CAACCATTCGATTTGCAAATACCGGAAACATCTCGGTAACTGCATATTCT      >  1:1668/1‑50
                                                   CAACCATTCGATTTGCAAATACCGGAACGTCTCGGTAACTGCATATTCTG     <  1:2162/50‑1
                                                     ACCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCA   >  1:3156/1‑50
                                                      CCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAT  <  1:4063/50‑1
                                                      CCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAT  <  1:849/50‑1
                                                                                                         
TGCTGAACTGTCAGACTTTGAGAAGGAAGATATCCTCGCATGGTGGAAGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_001416/41548‑41600
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacCATTCGATTTGCAAATACCGGAACATCTCGGTAACTGCATATTCTGCAT  >  NC_001416/41604‑41652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.