Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_001416 44,075 (CAAA)2→1 coding (190‑193/624 nt) Q → late gene regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_001416 44075 44078 4 28 [0] [0] 27 Q late gene regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_001416 = 440740 (0.000)25 (1.110) 20/88 0.0 100% coding (189/624 nt) Q late gene regulator
?NC_001416 44079 = 0 (0.000)coding (194/624 nt) Q late gene regulator

TCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGG  >  NC_001416/44025‑44120
                                                 |                                              
tCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAA                                                >  1:4389‑M1/1‑50 (MQ=255)
 cGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAa                                               <  1:4433‑M1/50‑2 (MQ=255)
  ggTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGAGAAAag                                              >  1:1245‑M1/1‑48 (MQ=255)
     aTGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggct                                           <  1:3579‑M1/50‑6 (MQ=255)
     aTGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggct                                           <  1:1353‑M1/50‑6 (MQ=255)
        gCTGCATTCTGCGGTAACACGAACTCAGCCAGAACGACAAAaggctatca                                       >  1:1880‑M1/1‑41 (MQ=255)
            cATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaact                                    <  1:1034‑M1/50‑13 (MQ=255)
            cATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaact                                    >  1:4699‑M1/1‑38 (MQ=255)
             aTTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaacta                                   >  1:3706‑M1/1‑37 (MQ=255)
              ttCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactat                                  >  1:2441‑M1/1‑36 (MQ=255)
               tCTGCGGTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatc                                 >  1:1581‑M1/1‑35 (MQ=255)
                    tgtAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatg                            >  1:3450‑M1/2‑30 (MQ=255)
                    ggTAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatg                            >  1:3687‑M1/1‑30 (MQ=255)
                      tAAGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgca                          >  1:2616‑M1/1‑28 (MQ=255)
                        aGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaat                        >  1:3955‑M1/1‑26 (MQ=255)
                        aGCACGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaat                        >  1:2729‑M1/1‑26 (MQ=255)
                           aCGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttg                     <  1:2537‑M1/50‑28 (MQ=255)
                            cGAACTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgc                    >  1:2909‑M1/1‑22 (MQ=255)
                              aaCTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgcac                  >  1:4610‑M1/1‑20 (MQ=255)
                                cTCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgcacac                >  1:4258‑M1/1‑18 (MQ=255)
                                cTCAGCCAGAACGACAAAaggctatcaactatctgatgcaattagcacac                >  1:3221‑M1/1‑18 (MQ=255)
                                 tCAGCCAGAACGACAAAaggctatcaactatctgatgcaatttgcacaca               >  1:4745‑M1/1‑17 (MQ=255)
                                      cAGAACGACAAAaggctatcaactatctgatgcaatttgcacacaaggta          >  1:3719‑M1/1‑12 (MQ=255)
                                       aGAACGACAAAaggctatcaactatctgatgcaatttgcacacaaggtat         >  1:2144‑M1/1‑11 (MQ=255)
                                           cGACAAAaggctatcaactatctgatgcaatttgcacacaaggtatcggg     >  1:4253‑M1/1‑7 (MQ=255)
                                           cGACAAAaggctatcaactatctgatgcaatttgcacacaaagtatcggg     >  1:2330‑M1/1‑7 (MQ=255)
                                              cAAAaggctatcaactatctgatgcaatttgcacacaagggatcggggaa  >  1:4603‑M1/1‑4 (MQ=255)
                                              cAAAaggctatacaactatctgatgcaatttgcacacaaggtatcgggga  <  1:916‑M1/50‑47 (MQ=255)
                                                 |                                              
TCGGTATGGCTGCATTCTGCGGTAAGCACGAACTCAGCCAGAACGACAAACAAAAGGCTATCAACTATCTGATGCAATTTGCACACAAGGTATCGG  >  NC_001416/44025‑44120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: